<!DOCTYPE Book PUBLIC "-//OASIS//DTD DocBook V4.1//EN" [
<!ENTITY intro SYSTEM "intro_chapter.sgml">
<!ENTITY start SYSTEM "start_chapter.sgml">
<!ENTITY mainwindow SYSTEM "main_window_chapter.sgml">
<!ENTITY ssh SYSTEM "ssh_chapter.sgml">
<!ENTITY proj SYSTEM "project_manager.sgml">
<!ENTITY options SYSTEM "options.sgml">
<!ENTITY filemenu SYSTEM "file_menu.sgml">
<!ENTITY menus SYSTEM "menus.sgml">
<!ENTITY runmenu SYSTEM "run_menu.sgml">
<!ENTITY displaymenu SYSTEM "display_menu.sgml">
<!ENTITY requirements SYSTEM "requirements.sgml">
<!ENTITY acknowledgments SYSTEM "acknowledgments.sgml">
<!ENTITY copyright SYSTEM "copyright.sgml">
<!ENTITY concepts SYSTEM "concepts.sgml">
<!ENTITY filetypes SYSTEM "filetypes.sgml">
<!ENTITY views-popup SYSTEM "views_popup.sgml">
<!ENTITY views-scrolling SYSTEM "views_scrolling.sgml">
<!ENTITY views-scale SYSTEM "views_scale.sgml">
<!ENTITY views-selection SYSTEM "views_selection.sgml">
<!ENTITY views-directedit SYSTEM "views_directedit.sgml">
<!ENTITY featurelist SYSTEM "feature_list.sgml">
<!ENTITY mousebuttons SYSTEM "mousebuttons.sgml">
<!ENTITY gettingjava SYSTEM "getting_java.sgml">
<!ENTITY unixargs SYSTEM "unix_args.sgml">
<!ENTITY jvmopts SYSTEM "jvm_options.sgml">
<!ENTITY options-menu SYSTEM "options_menu.sgml">
<!ENTITY nextgen SYSTEM "next_gen.sgml">

<!ENTITY % artemis-only "INCLUDE">
<!ENTITY % act-only "IGNORE">

<!ENTITY prog "Artemis">
<!ENTITY art "Artemis">

<!ENTITY command-name "art">

<!ENTITY lt CDATA "&#60;">
<!ENTITY gt CDATA "&#62;">
]>
<!-- see: http://www.pcmedia.co.nz/~michaelh/intro-to-sgml/html/c04.htm-->
<!-- and: http://www.pcmedia.co.nz/~michaelh/intro-to-sgml/html/template.sgml-->
<!-- $Header: //tmp/pathsoft/artemis/docs/manual.sgml,v 1.8 2008-01-15 16:36:19 tjc Exp $ -->
<BOOK ID="index">
  <TITLE> The &art; Manual </TITLE>
  <BOOKINFO>
    <PRODUCTNAME>
      <EMPHASIS>&art;</EMPHASIS> - a genome annotation tool
    </PRODUCTNAME>
    <PUBDATE>22 February 1999</PUBDATE>
    <COPYRIGHT>
      <YEAR>1999-2014</YEAR>
      <HOLDER>Genome Research Limited</HOLDER>
    </COPYRIGHT>
    <LEGALNOTICE>
      <PARA>&prog; is free software; you can redistribute
	it and/or modify it under the terms of the GNU General Public
	License as published by the Free Software Foundation; either
	version 2 of the License, or (at your option) any later
	version.</PARA>
      
      <PARA>This program is distributed in the hope that it will be
	useful, but WITHOUT ANY WARRANTY; without even the implied
	warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
	See the <ULINK URL="http://www.gnu.org/copyleft/gpl.html" 
        TYPE="external">GNU General Public License</ULINK> for more 
        details.</PARA>
      
      <PARA>You should have received a copy of the GNU General Public
	License along with this program; if not, write to the Free
	Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
	MA 02111-1307 USA</PARA>
      
      <PARA>For the full text of the license see <XREF LINKEND="COPYRIGHT">.
      </PARA>
    </LEGALNOTICE>
    <ABSTRACT>
      <PARA>
This document describes release 16 of &art; a DNA sequence viewer and
sequence annotation tool.
      </PARA>
    </ABSTRACT>
  </BOOKINFO>
  <TOC></TOC>
  &intro;
  &start;
  &mainwindow;
  &proj;
  &ssh;
  &options;
</BOOK>
