Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: GWAMA
Upstream-Contact: Reedik Mägi <reedik at well.ox.ac.uk>
Source: http://www.well.ox.ac.uk/gwama/
Files-Excluded: __MACOSX

Files: *
Copyright: 2009-2010 Reedik Mägi, Andrew P Morris <amorris at well.ox.ac.uk>.
License: BSD-3-clause

Files: ap.* apvt.h
Copyright: 2003-2008 Sergey Bochkanov (ALGLIB project).
License: BSD-3-clause
Comment: ALGLIB changes its license (from BSD-3-clause to GPL2+) with the version 2.1.0 in September 2009 (See  http://www.alglib.net/arcnews.php ). GWAMA uses old parts of ALGLIB before the relicensing.

Files: chisquaredistr.* gammaf.* igammaf.* normaldistr.*
Copyright: 1984-2007 Stephen L. Moshier (Cephes Math Library Release 2.8), Sergey Bochkanov (ALGLIB project).
License: BSD-3-clause
Comment: ALGLIB changes its license (from BSD-3-clause to GPL2+) with the version 2.1.0 in September 2009 (See  http://www.alglib.net/arcnews.php ). GWAMA uses old parts of ALGLIB before the relicensing.

Files: commandLine.cpp
Copyright: 2010 Andrew P Morris, Reedik Mägi
License: BSD-3-clause
Comment:
  -----------------
  Date: Thu, 4 Dec 2014 07:10:56 +0100
  From: Dylan <bob.dybian at gmail.com>
  To: <amorris at well.ox.ac.uk>
  .
  Dear Andrew P. Morris,
  .
  I am involved in Debian Med project which provide a GNU/Linux
  distribution for biomedical research. I am making a package of GWAMA
  for integration in official Debian repository, but some points need to be
  clarify to push GWAMA in Debian.
  .
  The first point is in your paper you said that GWAMA was released under BSD
  license, but you didn't precise which BSD license. I suppose it is
  BSD-3-clause license, could you please confirm it?
  .
  The second point to clarify is in the file "commandLine.cpp" at line 57, it
  says "GNU General Public License, v2", could you please confirm that it is
  a mistake and you want to refer to the BSD license from the first point?
  .
  Best regards,
  Dylan
  -----------------
  Date: Thu, 04 Dec 2014 08:41:55 +0200
  From: Reedik Magi <reedikm at gmail.com>
  To: <bob.dybian at gmail.com>
  CC: Andrew Morris <amorris at well.ox.ac.uk>
  .
  Dear Dylan,
  .
  We are mainly research oriented and actually have very little knowledge
  about pros and cons of different licence types - but yes BSD-3 clause seems
  to be appropriate. GNU licence, which is written into the log file is an
  error and will be fixed in new release.
  .
  Best wishes,
  Reedik
  .
  NB. GWAMA source files contain files from ALGLIB project, which have
  different copyright clauses (e.g. file normaldistr.cpp) but seem to be very
  similar to BSD-3 clause.
  -----------------
  Date: Thu, 4 Dec 2014 08:25:42 +0100
  From: Dylan <bob.dybian at gmail.com>
  To: Reedik Magi <reedikm at gmail.com>
  Cc: Andrew Morris <amorris at well.ox.ac.uk>
  .
  Dear Reedik,
  Thank you for your response.
  .
  As you can see the copyright file in debian folder contains all
  copyright of GWAMA files and already takes account of ALGLIB copyright.
  .
  If you agree, I will patch the commandLine.cpp file in debian package to
  make reference to BSD-3 clause. Could I copy your previous mail to a file
  in debian package for more transparency about these previous issues ?
  .
  Best regards,
  Dylan
  -----------------
  Date: Thu, 04 Dec 2014 09:30:34 +0200
  From: Reedik Magi <reedikm at gmail.com>
  To: Dylan <bob.dybian at gmail.com>
  CC: Andrew Morris <amorris at well.ox.ac.uk>
  .
  Dear Dylan,
  .
  Yes - feel free to do that!
  .
  Best wishes,
  Reedik
  -----------------

Files: statistics.*
Copyright: 2002-2003 Reedik Mägi, Lauris Kaplinski, BioData, Ltd.
License: BSD-3-clause

Files: debian/*
Copyright: 2014 Dylan Aïssi <bob.dybian@gmail.com>
License: BSD-3-clause

Files: debian/upstream.docs/*
Copyright: 2009-2010 Reedik Mägi, Andrew P Morris, Joshua C Randall, Matthias Wuttke.
License: BSD-3-clause

License: BSD-3-clause
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