# Makefile: makefile for BLIMPS blocks searcher
# Written by: Bill Alford
# (C) Copyright 1993-9, Fred Hutchinson Cancer Research Center 
# Use, modification or distribution of these programs is subject to 
# the terms of the non-commercial licensing agreement in license.h. 

# Instructions for use:
# 1. Change DEFINES, SYSTEM, OPTIMIZ, RANLIB, CC for your system
# 2. make depend
# 3. make install (updates ../bin and ../lib)


# System defines.  The main reason for this is that on the Sun there is a 
# function malloc_debug() wich will raise a signal if there are problems
# with memory.  The problem is that there is no function like that on other
# machines, at least that I've seen.  Defines are set up so that the
# malloc_debug call is only in the Sun code.

# Generic -- Should work on most systems not listed below.
#DEFINES = -DNO_STRDUP
#SYSTEM  = generic 
#OPTIMIZ =
#RANLIB = ../bin/ranlib

# SunOS
#DEFINES = 
#SYSTEM  = sun4.1.3
#OPTIMIZ = -O
#RANLIB = /bin/ranlib
## For debugging.
# DEFINES = -DMALLOC_DEBUG
# OTHER_OBJS = /usr/lib/debug/malloc.o 

# Sun Solaris
#DEFINES = 
#SYSTEM = solaris
#	Some programs don't give the same results when compiled with -fast,
#	e.g. codehop.c; offending options -fsimple=2
#OPTIMIZ = -fast
#OPTIMIZ = -xO5 -xarch=native -xmemalign=8s -xlibmil -fns -fsimple=2 -fsingle -xdepend=yes -xbuiltin=%all -xprefetch=auto,explicit 
#OPTIMIZ = -xO5 -xarch=native -xmemalign=8s -xlibmil -fns -fsimple=1 -fsingle -xdepend=yes -xbuiltin=%all -xprefetch=auto,explicit
#OPTIMIZ = -g
#	RANLIB is obsolete under Solaris 2.5; just put something here
#	so the Makefile continues to work.

# Linux
DEFINES = 
SYSTEM  = 
OPTIMIZ = -Wall -O2
RANLIB = ls

MAKE = make
DEPEND = makedepend

#	ar -t libpssm.a for table of contents
AR = ar
RM = rm -f
MV = mv -f 
CP = cp


# C compiler
CC = /usr/sfw/bin/gcc
#	Version from sunfreeware.com
#CC = /usr/local/bin/gcc
#CC = /opt/SUNWspro/bin/cc

# Optimization level (or debugging)
#OPTIMIZ = -g
#OPTIMIZ = -g -O $(WARNS) $(XWARN)
#OPTIMIZ = -p
WARNS = -W \
	-Wreturn-type \
	-Wswitch \
	-Wcomment \
	-Wtrigraphs \
	-Wformat \
	-Wparentheses 

# like -Wall but without 
#   -Wimplicit  -- gets all the printf's etc..
#   -Wunused    -- gets all the rcsid and 3 funcs. I know about
#   -Wchar-subscripts -- gets all ??_atob arrays (ascii to binary residue)
#   -Wuninitialized -- Caught 4 places which are tricky cases but are OK.

WARNS2 = -Wall
XWARN = -Wshadow \
	-Wcast-qual \
	-Wcast-align \
	-Wpointer-arith \
	-Waggregate-return \
	-Wredundant-decls \
	-Wnested-externs \
	-Winline

#    -Wtraditional -- gets printf, fprintf, etc.
#    -Wid-clash-16 -- causes lots of warnings.
#    -Wwrite-strings -- causes a LOT of warnings, think all are needed.
#    -Wconversion  -- causes a lot of warnings, but they look like they 
#                       should be OK.
#    -Wstrict-prototypes -Wmissing-prototypes -- too many to count...

XXWARN = -Werror

INCLUDE_DIR = ../include
INCLUDES = -I$(INCLUDE_DIR)


# C Flags to compiler
#CFLAGS = `getconf LFS_CFLAGS` $(OPTIMIZ) $(DEFINES) $(INCLUDES)
CFLAGS = $(OPTIMIZ) $(DEFINES) $(INCLUDES)


# Linker Flags
LDFLAGS = $(CFLAGS)
LDLIBS = -lblimps -lm
LDOPTIONS = $(LDFLAGS) $(LDDIR)
# cc ld options


#LIBRARY_DIR = ../lib
LIBRARY_DIR = ./
LDDIR = -L$(LIBRARY_DIR)


# source files
SRCS =  blimps-mem.c \
	blimps.c \
	blweight.c \
	blalign.c \
	bldist.c \
	blk2pssm.c \
	rank_matrix.c \
	retblock.c \
	codehop.c \
        htmlize-codehop.c \
        oligo_melt.c \
	mablock.c \
	cobbler.c \
	addseqs.c \
	fastaseqs.c \
	LAMA.c \
	find_biassed_blocks.c \
	makeblockmap.c \
	prints2blocks.c \
	lisblk.c \
	coduse.c \
	narrow.c \
	blk2slx.c \
	blkprob.c \
	blocks.c \
	config.c \
	convert.c \
	errors.c \
	files.c \
	frequency.c \
	gcode.c \
	lists.c \
	matrix.c \
	memory.c \
	pattern.c \
	scores.c \
	scoring.c \
	sequences.c \
	sl.c \
	strutil.c \
	version.c \
	options.c \
	protomat.c  \
	interpro.c \
	pssmdist.c \
	pssmBL.c \
	papssm.c \
	matrix_logob.c \
	makelogob.c \
	blocks_search.c \
	LAMA_search.c \
	block_vis.c \
	format_block.c \
	biassed_blocks_finder.c \
	htmlize-LAMA.c \
	show_aligned_blocks.c \
	blk2mot.c 

HDRS =  blimps.h \
	blweight.h \
	blimps-mem.h \
	config.h \
	lists.h \
	scores.h \
	scoring.h \
	protomat.h \
	p2c.h


# need the OBJS for blimps dependencies on the .o files.  I don't know a 
# way around this.

OTHER_OBJS_DEBUG =	/usr/lib/debug/malloc.o \
		/usr/lib/debug/mallocmap.o

LIBOBJS = pattern.o \
	files.o \
	frequency.o \
	convert.o \
	blocks.o \
	errors.o \
	gcode.o \
	matrix.o \
	memory.o \
	sequences.o \
	strutil.o \
	sl.o \
	version.o \
	options.o \
	blimps-mem.o \
	config.o \
	lists.o \
	scores.o \
	scoring.o \
	p2clib.o \
	util.o \
        protomat.o


# need malloc.o for malloc_debug() which will have free() raise SIGABRT
# if it is unable to free the space.

LIBRARIES = libblimps.a


########################################################################
########################################################################
#
# main dependencies
#
########################################################################
########################################################################

install: clean all move-lib move-bin

all: lib blimps blweight blalign bldist blk2pssm rank_matrix retblock codehop htmlize-codehop oligo_melt mablock cobbler addseqs fastaseqs LAMA find_biassed_blocks makeblockmap prints2blocks lisblk coduse narrow blk2slx blkprob interpro pssmdist pssmBL papssm matrix_logob makelogob blocks_search LAMA_search block_vis format_block biassed_blocks_finder htmlize-LAMA show_aligned_blocks makelis blk2mot 

blimps: $(LIBRARIES) blimps.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  blimps.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

makelis: $(LIBRARIES)  makelis.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  makelis.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

blweight: $(LIBRARIES) blweight.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  blweight.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

blalign: $(LIBRARIES) blalign.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  blalign.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

bldist: $(LIBRARIES) bldist.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  bldist.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 
blk2pssm: $(LIBRARIES) blk2pssm.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  blk2pssm.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

rank_matrix: $(LIBRARIES) rank_matrix.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  rank_matrix.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

retblock: $(LIBRARIES) retblock.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  retblock.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

codehop: $(LIBRARIES) codehop.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  codehop.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

htmlize-codehop: $(LIBRARIES) htmlize-codehop.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  htmlize-codehop.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

oligo_melt: $(LIBRARIES) oligo_melt.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  oligo_melt.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

mablock: $(LIBRARIES) mablock.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  mablock.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

cobbler: $(LIBRARIES) cobbler.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  cobbler.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

addseqs: $(LIBRARIES) addseqs.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  addseqs.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

fastaseqs: $(LIBRARIES) fastaseqs.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  fastaseqs.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

LAMA: $(LIBRARIES) LAMA.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  LAMA.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

find_biassed_blocks: $(LIBRARIES) find_biassed_blocks.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  find_biassed_blocks.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

makeblockmap: $(LIBRARIES) makeblockmap.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  makeblockmap.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

prints2blocks: $(LIBRARIES) prints2blocks.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  prints2blocks.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

lisblk: $(LIBRARIES) lisblk.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  lisblk.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

coduse: $(LIBRARIES) coduse.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  coduse.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

narrow: $(LIBRARIES) narrow.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  narrow.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

blk2slx: $(LIBRARIES) blk2slx.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  blk2slx.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

blkprob: $(LIBRARIES) blkprob.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  blkprob.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

interpro: $(LIBRARIES) interpro.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  interpro.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

pssmdist: $(LIBRARIES) pssmdist.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  pssmdist.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

pssmBL: $(LIBRARIES) pssmBL.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  pssmBL.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

papssm: $(LIBRARIES) papssm.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  papssm.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

matrix_logob: $(LIBRARIES) matrix_logob.o $(LIBOBJS) 
	$(RM) $@
	$(CC) -o $@  matrix_logob.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

makelogob: $(LIBRARIES) makelogob.o $(LIBOBJS)
	$(RM) $@
	$(CC) -o $@  makelogob.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

blocks_search: $(LIBRARIES) blocks_search.o $(LIBOBJS)
	$(RM) $@
	$(CC) -o $@  blocks_search.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

LAMA_search: $(LIBRARIES) LAMA_search.o $(LIBOBJS)
	$(RM) $@
	$(CC) -o $@  LAMA_search.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

block_vis: $(LIBRARIES) block_vis.o $(LIBOBJS)
	$(RM) $@
	$(CC) -o $@  block_vis.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

format_block: $(LIBRARIES) format_block.o $(LIBOBJS)
	$(RM) $@
	$(CC) -o $@  format_block.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

biassed_blocks_finder: $(LIBRARIES) biassed_blocks_finder.o $(LIBOBJS)
	$(RM) $@
	$(CC) -o $@  biassed_blocks_finder.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

htmlize-LAMA: $(LIBRARIES) htmlize-LAMA.o $(LIBOBJS)
	$(RM) $@
	$(CC) -o $@  htmlize-LAMA.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

show_aligned_blocks: $(LIBRARIES) show_aligned_blocks.o $(LIBOBJS)
	$(RM) $@
	$(CC) -o $@  show_aligned_blocks.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 

blk2mot: $(LIBRARIES) blk2mot.o $(LIBOBJS)
	$(RM) $@
	$(CC) -o $@  blk2mot.o $(LDOPTIONS) $(LDLIBS) $(SYSLIBS) $(EXTRA_LOAD_FLAGS) 


$(LIBOBJS):


########################################################################
########################################################################
#
# include dependencies
#
########################################################################
########################################################################

# none




########################################################################
########################################################################
#
# library dependencies
#
########################################################################
########################################################################

lib: ranlib $(LIBRARIES)

ranlib:
	$(GET_FILES)

#	( cd $(LIBRARY_DIR) ; $(MAKE) $(MFLAGS) )

#
# The libraries.
#

libblimps.a: $(LIBOBJS)
	$(AR) cr $@ $(LIBOBJS) ; $(RANLIB) $@

########################################################################
########################################################################
#
# Local building (for us)
#
########################################################################
########################################################################

#  os = OS_machinename_version
local: clean clean-include clean-lib 
	echo " " ; \
	echo "Making directories..." ; \
	echo " " ; \
	os="`uname -sr | tr ' ' '_'`" ; \
	osdir="../$$os" ; \
	rm -rf $$osdir ; \
	mkdir $$osdir $$osdir/bin $$osdir/include $$osdir/lib ; \
	echo " " ; \
	echo "Running 'make depend' and 'make all'..." ; \
	echo " " ; \
	make depend ; make all	; \
	echo " " ; \
	echo "Copying libraries..." ; \
	echo " " ; \
	cp ../lib/*.a $$osdir/lib ; \
	echo " " ; \
	echo "Copying header files..." ; \
	echo " " ; \
	cp ../include/*.h $$osdir/include ; \
	echo " " ; \
	echo "Copying binary..." ; \
	echo " " ; \
	cp blimps $$osdir/bin





########################################################################
########################################################################
#
# Maintenance dependencies
#
########################################################################
########################################################################


tags: 
	etags ./*.[ch] $(INCLUDE_DIR)/*.[ch]


depend: 
	 $(DEPEND) -- $(CFLAGS) -- -s "# DO NOT DELETE" -- $(SRCS)


clean::
	$(RM) blimps blweight blalign bldist blk2pssm rank_matrix retblock codehop htmlize-codehop oligo_melt mablock makeblockmap prints2blocks lisblk coduse narrow blkprob blk2slx LAMA find_biassed_blocks fastaseqs addseqs cobbler interpro pssmdist pssmBL papssm matrix_logob makelogob blocks_search LAMA_search block_vis format_block biassed_blocks_finder htmlize-LAMA show_aligned_blocks makelis blk2mot 
	$(RM) *.a *.o *~ 
	@echo " "

move-lib:
	$(MV) lib*.a ../lib

move-bin:
	$(MV) blimps ../bin
	$(MV) blweight ../bin
	$(MV) blalign ../bin
	$(MV) bldist ../bin
	$(MV) blk2pssm ../bin
	$(MV) rank_matrix ../bin
	$(MV) retblock ../bin
	$(MV) codehop ../bin
	$(MV) htmlize-codehop ../bin
	$(MV) oligo_melt ../bin
	$(MV) mablock ../bin
	$(MV) makeblockmap ../bin
	$(MV) prints2blocks ../bin
	$(MV) lisblk ../bin
	$(MV) coduse ../bin
	$(MV) narrow ../bin
	$(MV) blkprob ../bin
	$(MV) blk2slx ../bin
	$(MV) LAMA ../bin
	$(MV) find_biassed_blocks ../bin
	$(MV) fastaseqs ../bin
	$(MV) addseqs ../bin
	$(MV) cobbler ../bin
	$(MV) interpro ../bin
	$(MV) pssmdist ../bin
	$(MV) pssmBL ../bin
	$(MV) papssm ../bin
	$(MV) matrix_logob ../bin
	$(MV) makelogob ../bin
	$(MV) blocks_search ../bin
	$(MV) LAMA_search ../bin
	$(MV) block_vis ../bin
	$(MV) format_block ../bin
	$(MV) biassed_blocks_finder ../bin
	$(MV) htmlize-LAMA ../bin
	$(MV) show_aligned_blocks ../bin
	$(MV) makelis ../bin
	$(MV) blk2mot ../bin


##########
##########
#
# Distribution dependencies
#
##########
##########

SOURCEDIR  = /lab/billa/blimps/dev
BUILDDIR   = /lab/billa/blimps/build-local
DISTRIBDIR = /lab/billa/blimps/distrib
VERSIONDISTRIB = $(DISTRIBDIR).$(VERSION)
BLIMPSDIR  = $(DISTRIBDIR)/blimps
FTPDIR     = /lab/ftp/blimps

TXTVER = `echo  $(VERSION) | \
	 awk -F. '{printf("%d.%d%c", $$1, $$2 / 1000 , \
	 ( $$2 % 1000 ) / 100 + 65)}'`

#
# REMEMBER: each line executes in the directory make started in
#

local-binary: clean-local-binary
	@if [ "$(VERSION)" = "" ] ; then \
		echo "No version specified, bailing out." ; \
		echo "use as: make [ target ... ] VERSION=1.1001" ; \
		echo "    ex: make distrib VERSION=1.1001" ; \
		bail-out-here ; \
	fi
	
	@echo Building local binary for distribution . . .
	@echo " "
	
	@echo Making local build directory . . .
	@mkdir -p $(BUILDDIR)
	
	@echo Making blimps, lib, and include subdirectories . . .
	@mkdir -p $(BUILDDIR)/blimps
	@mkdir -p $(BUILDDIR)/lib
	@mkdir -p $(BUILDDIR)/include
	
	@echo Copying Makefiles over . . .
	@echo REMOVING RCS SUBDIR DEPENDENCY BY THE GREP > /dev/null
	@cat $(SOURCEDIR)/blimps/Makefile | grep -v 'RCS/\$$\$$\@,v' > $(BUILDDIR)/blimps/Makefile
	@cat $(SOURCEDIR)/lib/Makefile | grep -v 'RCS/\$$\$$\@,v' >    $(BUILDDIR)/lib/Makefile
	@cat $(SOURCEDIR)/include/Makefile | grep -v 'RCS/\$$\$$\@,v' >$(BUILDDIR)/include/Makefile
	
	@ln -s $(SOURCEDIR)/blimps/RCS  $(BUILDDIR)/blimps/RCS
	@ln -s $(SOURCEDIR)/lib/RCS     $(BUILDDIR)/lib/RCS
	@ln -s $(SOURCEDIR)/include/RCS $(BUILDDIR)/include/RCS
	
	@echo Making local version dependencies . . .
	cd $(BUILDDIR)/blimps ; make VERSION="$(VERSION)" clean ; make VERSION="$(VERSION)" depend 
	
	@echo Removing RCS files to test distrib compilation
	@rm -f $(BUILDDIR)/blimps/RCS
	@rm -f $(BUILDDIR)/lib/RCS
	@rm -f $(BUILDDIR)/include/RCS
	
	@echo Making local version . . .
	cd $(BUILDDIR)/blimps ; make VERSION="$(VERSION)" blimps
	
	@echo Moving local binary into distribution directory . . .
	@mv $(BUILDDIR)/blimps/blimps $(SOURCEDIR)/bin/blimps.$(SYSTEM)
	@echo " "

clean-local-binary:
	@echo Cleaning local build directory \($(BUILDDIR)\) . . .
	rm -rf $(BUILDDIR)
	@echo " "


distrib: local-binary clean-distrib
	@if [ "$(VERSION)" = "" ] ; then \
		echo "No version specified, bailing out." ; \
		echo "use as: make [ target ... ] VERSION=1.1001" ; \
		echo "    ex: make distrib VERSION=1.1001" ; \
		bail-out-here ; \
	fi
	
	@echo Making distribution . . .
	@echo " "
	
	@echo Making distribution directories . . .
	@mkdir -p $(DISTRIBDIR)
	@mkdir -p $(BLIMPSDIR) \
		  $(BLIMPSDIR)/docs \
		  $(BLIMPSDIR)/blimps \
		  $(BLIMPSDIR)/lib \
		  $(BLIMPSDIR)/include \
		  $(BLIMPSDIR)/bin
	@ln -s $(SOURCEDIR)/blimps/RCS  $(BLIMPSDIR)/blimps/RCS
	@ln -s $(SOURCEDIR)/lib/RCS     $(BLIMPSDIR)/lib/RCS
	@ln -s $(SOURCEDIR)/include/RCS $(BLIMPSDIR)/include/RCS
	@ln -s $(SOURCEDIR)/docs/RCS    $(BLIMPSDIR)/docs/RCS
	
	@echo Copying Makefiles over . . .
	@cat $(SOURCEDIR)/blimps/Makefile | grep -v 'RCS/\$$\$$\@,v' > $(BLIMPSDIR)/blimps/Makefile
	@cat $(SOURCEDIR)/lib/Makefile | grep -v 'RCS/\$$\$$\@,v' > $(BLIMPSDIR)/lib/Makefile
	@cat $(SOURCEDIR)/include/Makefile | grep -v 'RCS/\$$\$$\@,v' > $(BLIMPSDIR)/include/Makefile
	
	@echo Making depend on the Makefiles to checkout the files
	cd $(BLIMPSDIR)/blimps ; make VERSION="$(VERSION)" depend
	@rm -f $(BLIMPSDIR)/blimps/RCS
	@rm -f $(BLIMPSDIR)/lib/RCS
	@rm -f $(BLIMPSDIR)/include/RCS
	
	@echo Copying distribution documents of version $(VERSION) into docs directory . . .
	@cd $(BLIMPSDIR)/docs ; co -q -r$(VERSION) RCS/*
	@rm -f $(BLIMPSDIR)/docs/RCS
	@cd $(BLIMPSDIR)/docs ; cp README INSTALL ..
	
	@echo Copying pre-compiled binaries into bin directory . . .
	@cp $(SOURCEDIR)/bin/* $(BLIMPSDIR)/bin/
	
	@echo Moving blimps to blimps.$(TXTVER)
	@mv $(BLIMPSDIR) $(DISTRIBDIR)/blimps.$(TXTVER)
	@echo " "
	
	@echo Making tar file . . .
	@cd $(DISTRIBDIR) ; tar cf blimps.$(TXTVER).tar blimps.$(TXTVER)
	
	@echo Compressing tar file . . .
	@cd $(DISTRIBDIR) ; compress blimps.$(TXTVER).tar
	@echo " "
	
	@echo Moving distrib dir to distrib.$(VERSION)
	@mv $(DISTRIBDIR) $(VERSIONDISTRIB)

clean-distrib:
	@echo  Cleaning distribution directories:
	@echo "     $(DISTRIBDIR)"
	@echo "     $(VERSIONDISTRIB)"
	@echo " . . . "
	rm -rf $(DISTRIBDIR) $(VERSIONDISTRIB)
	@echo " "

$(VERSIONDISTRIB):	distrib

ftp:	$(VERSIONDISTRIB)
	@echo Moving files to the ftp directory . . .
	@echo " "
	
	@echo Copying tar file to the ftp directory . . .
	@cp $(VERSIONDISTRIB)/blimps.$(TXTVER).tar.Z $(FTPDIR)
	@echo " "
	
	@echo Copying README and INSTALL files to the ftp directory . . .
	@rm -f $(FTPDIR)/README $(FTPDIR)/INSTALL 
	@cp $(VERSIONDISTRIB)/blimps.$(TXTVER)/docs/README \
	  $(VERSIONDISTRIB)/blimps.$(TXTVER)/docs/INSTALL $(FTPDIR)
	@echo " "



###########################################################################

 
###########################################################################
# dependencies generated by makedepend
 
# DO NOT DELETE

blimps-mem.o: ../include/global.h /usr/include/stdlib.h
blimps-mem.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
blimps-mem.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
blimps-mem.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
blimps-mem.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
blimps-mem.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
blimps-mem.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
blimps-mem.o: /usr/include/iso/string_iso.h /usr/include/stddef.h
blimps-mem.o: /usr/include/iso/stddef_iso.h /usr/include/ctype.h
blimps-mem.o: /usr/include/iso/ctype_iso.h /usr/include/iso/ctype_c99.h
blimps-mem.o: /usr/include/malloc.h /usr/include/sys/types.h
blimps-mem.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
blimps-mem.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
blimps-mem.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
blimps-mem.o: /usr/include/sys/time.h ../include/license.h
blimps-mem.o: ../include/strutil.h ../include/errors.h ../include/memory.h
blimps-mem.o: blimps-mem.h blimps.h lists.h ../include/skiplist.h
blimps.o: /usr/include/math.h /usr/include/iso/math_iso.h
blimps.o: /usr/include/sys/feature_tests.h /usr/include/sys/ccompile.h
blimps.o: /usr/include/sys/isa_defs.h /usr/include/iso/math_c99.h
blimps.o: /usr/include/signal.h /usr/include/iso/signal_iso.h
blimps.o: /usr/include/sys/iso/signal_iso.h /usr/include/sys/unistd.h
blimps.o: /usr/include/sys/signal.h ../include/global.h /usr/include/stdlib.h
blimps.o: /usr/include/iso/stdlib_iso.h /usr/include/iso/stdlib_c99.h
blimps.o: /usr/include/stdio.h /usr/include/iso/stdio_iso.h
blimps.o: /usr/include/sys/va_list.h /usr/include/stdio_tag.h
blimps.o: /usr/include/stdio_impl.h /usr/include/iso/stdio_c99.h
blimps.o: /usr/include/string.h /usr/include/iso/string_iso.h
blimps.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
blimps.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
blimps.o: /usr/include/iso/ctype_c99.h /usr/include/malloc.h
blimps.o: /usr/include/sys/types.h /usr/include/sys/machtypes.h
blimps.o: /usr/include/ia32/sys/machtypes.h /usr/include/sys/int_types.h
blimps.o: /usr/include/sys/select.h /usr/include/sys/time_impl.h
blimps.o: /usr/include/sys/time.h /usr/include/sys/time.h
blimps.o: ../include/license.h ../include/strutil.h ../include/errors.h
blimps.o: ../include/memory.h ../include/version.h ../include/residues.h
blimps.o: ../include/blastapp.h /usr/include/limits.h
blimps.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
blimps.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
blimps.o: ../include/files.h ../include/blocks.h ../include/output.h
blimps.o: ../include/sequences.h ../include/matrix.h ../include/pattern.h
blimps.o: ../include/convert.h ../include/frequency.h ../include/options.h
blimps.o: blimps.h blimps-mem.h config.h scores.h scoring.h lists.h
blimps.o: ../include/skiplist.h
blweight.o: ../include/blocksprogs.h /usr/include/stdlib.h
blweight.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
blweight.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
blweight.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
blweight.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
blweight.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
blweight.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
blweight.o: /usr/include/iso/string_iso.h /usr/include/math.h
blweight.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
blweight.o: /usr/include/unistd.h /usr/include/sys/types.h
blweight.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
blweight.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
blweight.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
blweight.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
blweight.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
blweight.o: /usr/include/iso/ctype_c99.h ../include/global.h
blweight.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
blweight.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
blweight.o: ../include/errors.h ../include/memory.h ../include/residues.h
blweight.o: ../include/blastapp.h /usr/include/limits.h
blweight.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
blweight.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
blweight.o: ../include/blocks.h ../include/output.h ../include/sequences.h
blweight.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
blweight.o: ../include/frequency.h ../include/files.h ../include/protomat.h
blalign.o: ../include/blocksprogs.h /usr/include/stdlib.h
blalign.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
blalign.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
blalign.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
blalign.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
blalign.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
blalign.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
blalign.o: /usr/include/iso/string_iso.h /usr/include/math.h
blalign.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
blalign.o: /usr/include/unistd.h /usr/include/sys/types.h
blalign.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
blalign.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
blalign.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
blalign.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
blalign.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
blalign.o: /usr/include/iso/ctype_c99.h ../include/global.h
blalign.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
blalign.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
blalign.o: ../include/errors.h ../include/memory.h ../include/residues.h
blalign.o: ../include/blastapp.h /usr/include/limits.h
blalign.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
blalign.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
blalign.o: ../include/blocks.h ../include/output.h ../include/sequences.h
blalign.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
blalign.o: ../include/frequency.h ../include/files.h ../include/protomat.h
bldist.o: ../include/blocksprogs.h /usr/include/stdlib.h
bldist.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
bldist.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
bldist.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
bldist.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
bldist.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
bldist.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
bldist.o: /usr/include/iso/string_iso.h /usr/include/math.h
bldist.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
bldist.o: /usr/include/unistd.h /usr/include/sys/types.h
bldist.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
bldist.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
bldist.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
bldist.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
bldist.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
bldist.o: /usr/include/iso/ctype_c99.h ../include/global.h
bldist.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
bldist.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
bldist.o: ../include/errors.h ../include/memory.h ../include/residues.h
bldist.o: ../include/blastapp.h /usr/include/limits.h
bldist.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
bldist.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
bldist.o: ../include/blocks.h ../include/output.h ../include/sequences.h
bldist.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
bldist.o: ../include/frequency.h ../include/files.h ../include/protomat.h
blk2pssm.o: ../include/blocksprogs.h /usr/include/stdlib.h
blk2pssm.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
blk2pssm.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
blk2pssm.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
blk2pssm.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
blk2pssm.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
blk2pssm.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
blk2pssm.o: /usr/include/iso/string_iso.h /usr/include/math.h
blk2pssm.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
blk2pssm.o: /usr/include/unistd.h /usr/include/sys/types.h
blk2pssm.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
blk2pssm.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
blk2pssm.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
blk2pssm.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
blk2pssm.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
blk2pssm.o: /usr/include/iso/ctype_c99.h ../include/global.h
blk2pssm.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
blk2pssm.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
blk2pssm.o: ../include/errors.h ../include/memory.h ../include/residues.h
blk2pssm.o: ../include/blastapp.h /usr/include/limits.h
blk2pssm.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
blk2pssm.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
blk2pssm.o: ../include/blocks.h ../include/output.h ../include/sequences.h
blk2pssm.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
blk2pssm.o: ../include/frequency.h ../include/files.h ../include/protomat.h
rank_matrix.o: ../include/blocksprogs.h /usr/include/stdlib.h
rank_matrix.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
rank_matrix.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
rank_matrix.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
rank_matrix.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
rank_matrix.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
rank_matrix.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
rank_matrix.o: /usr/include/iso/string_iso.h /usr/include/math.h
rank_matrix.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
rank_matrix.o: /usr/include/unistd.h /usr/include/sys/types.h
rank_matrix.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
rank_matrix.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
rank_matrix.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
rank_matrix.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
rank_matrix.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
rank_matrix.o: /usr/include/iso/ctype_c99.h ../include/global.h
rank_matrix.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
rank_matrix.o: /usr/include/malloc.h ../include/license.h
rank_matrix.o: ../include/strutil.h ../include/errors.h ../include/memory.h
rank_matrix.o: ../include/residues.h ../include/blastapp.h
rank_matrix.o: /usr/include/limits.h /usr/include/iso/limits_iso.h
rank_matrix.o: ../include/alphabet.h ../include/aabet.h ../include/ntbet.h
rank_matrix.o: ../include/gcode.h ../include/blocks.h ../include/output.h
rank_matrix.o: ../include/sequences.h ../include/matrix.h
rank_matrix.o: ../include/pattern.h ../include/convert.h
rank_matrix.o: ../include/frequency.h ../include/files.h
rank_matrix.o: ../include/protomat.h
retblock.o: ../include/blocksprogs.h /usr/include/stdlib.h
retblock.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
retblock.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
retblock.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
retblock.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
retblock.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
retblock.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
retblock.o: /usr/include/iso/string_iso.h /usr/include/math.h
retblock.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
retblock.o: /usr/include/unistd.h /usr/include/sys/types.h
retblock.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
retblock.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
retblock.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
retblock.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
retblock.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
retblock.o: /usr/include/iso/ctype_c99.h ../include/global.h
retblock.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
retblock.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
retblock.o: ../include/errors.h ../include/memory.h ../include/residues.h
retblock.o: ../include/blastapp.h /usr/include/limits.h
retblock.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
retblock.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
retblock.o: ../include/blocks.h ../include/output.h ../include/sequences.h
retblock.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
retblock.o: ../include/frequency.h ../include/files.h ../include/protomat.h
codehop.o: ../include/blocksprogs.h /usr/include/stdlib.h
codehop.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
codehop.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
codehop.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
codehop.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
codehop.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
codehop.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
codehop.o: /usr/include/iso/string_iso.h /usr/include/math.h
codehop.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
codehop.o: /usr/include/unistd.h /usr/include/sys/types.h
codehop.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
codehop.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
codehop.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
codehop.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
codehop.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
codehop.o: /usr/include/iso/ctype_c99.h ../include/global.h
codehop.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
codehop.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
codehop.o: ../include/errors.h ../include/memory.h ../include/residues.h
codehop.o: ../include/blastapp.h /usr/include/limits.h
codehop.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
codehop.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
codehop.o: ../include/blocks.h ../include/output.h ../include/sequences.h
codehop.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
codehop.o: ../include/frequency.h ../include/files.h ../include/protomat.h
codehop.o: codehop.h
htmlize-codehop.o: /usr/include/stdio.h /usr/include/sys/feature_tests.h
htmlize-codehop.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
htmlize-codehop.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
htmlize-codehop.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
htmlize-codehop.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
htmlize-codehop.o: /usr/include/iso/string_iso.h /usr/include/stdlib.h
htmlize-codehop.o: /usr/include/iso/stdlib_iso.h
htmlize-codehop.o: /usr/include/iso/stdlib_c99.h
oligo_melt.o: ../include/blocksprogs.h /usr/include/stdlib.h
oligo_melt.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
oligo_melt.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
oligo_melt.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
oligo_melt.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
oligo_melt.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
oligo_melt.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
oligo_melt.o: /usr/include/iso/string_iso.h /usr/include/math.h
oligo_melt.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
oligo_melt.o: /usr/include/unistd.h /usr/include/sys/types.h
oligo_melt.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
oligo_melt.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
oligo_melt.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
oligo_melt.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
oligo_melt.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
oligo_melt.o: /usr/include/iso/ctype_c99.h ../include/global.h
oligo_melt.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
oligo_melt.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
oligo_melt.o: ../include/errors.h ../include/memory.h ../include/residues.h
oligo_melt.o: ../include/blastapp.h /usr/include/limits.h
oligo_melt.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
oligo_melt.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
oligo_melt.o: ../include/blocks.h ../include/output.h ../include/sequences.h
oligo_melt.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
oligo_melt.o: ../include/frequency.h ../include/files.h ../include/protomat.h
mablock.o: ../include/blocksprogs.h /usr/include/stdlib.h
mablock.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
mablock.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
mablock.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
mablock.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
mablock.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
mablock.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
mablock.o: /usr/include/iso/string_iso.h /usr/include/math.h
mablock.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
mablock.o: /usr/include/unistd.h /usr/include/sys/types.h
mablock.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
mablock.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
mablock.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
mablock.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
mablock.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
mablock.o: /usr/include/iso/ctype_c99.h ../include/global.h
mablock.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
mablock.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
mablock.o: ../include/errors.h ../include/memory.h ../include/residues.h
mablock.o: ../include/blastapp.h /usr/include/limits.h
mablock.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
mablock.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
mablock.o: ../include/blocks.h ../include/output.h ../include/sequences.h
mablock.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
mablock.o: ../include/frequency.h ../include/files.h ../include/protomat.h
cobbler.o: ../include/blocksprogs.h /usr/include/stdlib.h
cobbler.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
cobbler.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
cobbler.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
cobbler.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
cobbler.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
cobbler.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
cobbler.o: /usr/include/iso/string_iso.h /usr/include/math.h
cobbler.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
cobbler.o: /usr/include/unistd.h /usr/include/sys/types.h
cobbler.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
cobbler.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
cobbler.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
cobbler.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
cobbler.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
cobbler.o: /usr/include/iso/ctype_c99.h ../include/global.h
cobbler.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
cobbler.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
cobbler.o: ../include/errors.h ../include/memory.h ../include/residues.h
cobbler.o: ../include/blastapp.h /usr/include/limits.h
cobbler.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
cobbler.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
cobbler.o: ../include/blocks.h ../include/output.h ../include/sequences.h
cobbler.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
cobbler.o: ../include/frequency.h ../include/files.h ../include/protomat.h
addseqs.o: ../include/blocksprogs.h /usr/include/stdlib.h
addseqs.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
addseqs.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
addseqs.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
addseqs.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
addseqs.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
addseqs.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
addseqs.o: /usr/include/iso/string_iso.h /usr/include/math.h
addseqs.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
addseqs.o: /usr/include/unistd.h /usr/include/sys/types.h
addseqs.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
addseqs.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
addseqs.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
addseqs.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
addseqs.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
addseqs.o: /usr/include/iso/ctype_c99.h ../include/global.h
addseqs.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
addseqs.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
addseqs.o: ../include/errors.h ../include/memory.h ../include/residues.h
addseqs.o: ../include/blastapp.h /usr/include/limits.h
addseqs.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
addseqs.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
addseqs.o: ../include/blocks.h ../include/output.h ../include/sequences.h
addseqs.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
addseqs.o: ../include/frequency.h ../include/files.h ../include/protomat.h
fastaseqs.o: ../include/blocksprogs.h /usr/include/stdlib.h
fastaseqs.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
fastaseqs.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
fastaseqs.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
fastaseqs.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
fastaseqs.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
fastaseqs.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
fastaseqs.o: /usr/include/iso/string_iso.h /usr/include/math.h
fastaseqs.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
fastaseqs.o: /usr/include/unistd.h /usr/include/sys/types.h
fastaseqs.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
fastaseqs.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
fastaseqs.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
fastaseqs.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
fastaseqs.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
fastaseqs.o: /usr/include/iso/ctype_c99.h ../include/global.h
fastaseqs.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
fastaseqs.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
fastaseqs.o: ../include/errors.h ../include/memory.h ../include/residues.h
fastaseqs.o: ../include/blastapp.h /usr/include/limits.h
fastaseqs.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
fastaseqs.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
fastaseqs.o: ../include/blocks.h ../include/output.h ../include/sequences.h
fastaseqs.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
fastaseqs.o: ../include/frequency.h ../include/files.h ../include/protomat.h
LAMA.o: ../include/blocksprogs.h /usr/include/stdlib.h
LAMA.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
LAMA.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
LAMA.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
LAMA.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
LAMA.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
LAMA.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
LAMA.o: /usr/include/iso/string_iso.h /usr/include/math.h
LAMA.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
LAMA.o: /usr/include/unistd.h /usr/include/sys/types.h
LAMA.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
LAMA.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
LAMA.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
LAMA.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
LAMA.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
LAMA.o: /usr/include/iso/ctype_c99.h ../include/global.h
LAMA.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
LAMA.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
LAMA.o: ../include/errors.h ../include/memory.h ../include/residues.h
LAMA.o: ../include/blastapp.h /usr/include/limits.h
LAMA.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
LAMA.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
LAMA.o: ../include/blocks.h ../include/output.h ../include/sequences.h
LAMA.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
LAMA.o: ../include/frequency.h ../include/files.h ../include/protomat.h
LAMA.o: LAMA.h
find_biassed_blocks.o: ../include/blocksprogs.h /usr/include/stdlib.h
find_biassed_blocks.o: /usr/include/iso/stdlib_iso.h
find_biassed_blocks.o: /usr/include/sys/feature_tests.h
find_biassed_blocks.o: /usr/include/sys/ccompile.h
find_biassed_blocks.o: /usr/include/sys/isa_defs.h
find_biassed_blocks.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
find_biassed_blocks.o: /usr/include/iso/stdio_iso.h
find_biassed_blocks.o: /usr/include/sys/va_list.h /usr/include/stdio_tag.h
find_biassed_blocks.o: /usr/include/stdio_impl.h /usr/include/iso/stdio_c99.h
find_biassed_blocks.o: /usr/include/string.h /usr/include/iso/string_iso.h
find_biassed_blocks.o: /usr/include/math.h /usr/include/iso/math_iso.h
find_biassed_blocks.o: /usr/include/iso/math_c99.h /usr/include/unistd.h
find_biassed_blocks.o: /usr/include/sys/types.h /usr/include/sys/machtypes.h
find_biassed_blocks.o: /usr/include/ia32/sys/machtypes.h
find_biassed_blocks.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
find_biassed_blocks.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
find_biassed_blocks.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
find_biassed_blocks.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
find_biassed_blocks.o: /usr/include/iso/ctype_c99.h ../include/global.h
find_biassed_blocks.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
find_biassed_blocks.o: /usr/include/malloc.h ../include/license.h
find_biassed_blocks.o: ../include/strutil.h ../include/errors.h
find_biassed_blocks.o: ../include/memory.h ../include/residues.h
find_biassed_blocks.o: ../include/blastapp.h /usr/include/limits.h
find_biassed_blocks.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
find_biassed_blocks.o: ../include/aabet.h ../include/ntbet.h
find_biassed_blocks.o: ../include/gcode.h ../include/blocks.h
find_biassed_blocks.o: ../include/output.h ../include/sequences.h
find_biassed_blocks.o: ../include/matrix.h ../include/pattern.h
find_biassed_blocks.o: ../include/convert.h ../include/frequency.h
find_biassed_blocks.o: ../include/files.h ../include/protomat.h blkvblk.h
makeblockmap.o: ../include/blocksprogs.h /usr/include/stdlib.h
makeblockmap.o: /usr/include/iso/stdlib_iso.h
makeblockmap.o: /usr/include/sys/feature_tests.h /usr/include/sys/ccompile.h
makeblockmap.o: /usr/include/sys/isa_defs.h /usr/include/iso/stdlib_c99.h
makeblockmap.o: /usr/include/stdio.h /usr/include/iso/stdio_iso.h
makeblockmap.o: /usr/include/sys/va_list.h /usr/include/stdio_tag.h
makeblockmap.o: /usr/include/stdio_impl.h /usr/include/iso/stdio_c99.h
makeblockmap.o: /usr/include/string.h /usr/include/iso/string_iso.h
makeblockmap.o: /usr/include/math.h /usr/include/iso/math_iso.h
makeblockmap.o: /usr/include/iso/math_c99.h /usr/include/unistd.h
makeblockmap.o: /usr/include/sys/types.h /usr/include/sys/machtypes.h
makeblockmap.o: /usr/include/ia32/sys/machtypes.h
makeblockmap.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
makeblockmap.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
makeblockmap.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
makeblockmap.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
makeblockmap.o: /usr/include/iso/ctype_c99.h ../include/global.h
makeblockmap.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
makeblockmap.o: /usr/include/malloc.h ../include/license.h
makeblockmap.o: ../include/strutil.h ../include/errors.h ../include/memory.h
makeblockmap.o: ../include/residues.h ../include/blastapp.h
makeblockmap.o: /usr/include/limits.h /usr/include/iso/limits_iso.h
makeblockmap.o: ../include/alphabet.h ../include/aabet.h ../include/ntbet.h
makeblockmap.o: ../include/gcode.h ../include/blocks.h ../include/output.h
makeblockmap.o: ../include/sequences.h ../include/matrix.h
makeblockmap.o: ../include/pattern.h ../include/convert.h
makeblockmap.o: ../include/frequency.h ../include/files.h
makeblockmap.o: ../include/protomat.h blockmap.h
prints2blocks.o: ../include/blocksprogs.h /usr/include/stdlib.h
prints2blocks.o: /usr/include/iso/stdlib_iso.h
prints2blocks.o: /usr/include/sys/feature_tests.h /usr/include/sys/ccompile.h
prints2blocks.o: /usr/include/sys/isa_defs.h /usr/include/iso/stdlib_c99.h
prints2blocks.o: /usr/include/stdio.h /usr/include/iso/stdio_iso.h
prints2blocks.o: /usr/include/sys/va_list.h /usr/include/stdio_tag.h
prints2blocks.o: /usr/include/stdio_impl.h /usr/include/iso/stdio_c99.h
prints2blocks.o: /usr/include/string.h /usr/include/iso/string_iso.h
prints2blocks.o: /usr/include/math.h /usr/include/iso/math_iso.h
prints2blocks.o: /usr/include/iso/math_c99.h /usr/include/unistd.h
prints2blocks.o: /usr/include/sys/types.h /usr/include/sys/machtypes.h
prints2blocks.o: /usr/include/ia32/sys/machtypes.h
prints2blocks.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
prints2blocks.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
prints2blocks.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
prints2blocks.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
prints2blocks.o: /usr/include/iso/ctype_c99.h ../include/global.h
prints2blocks.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
prints2blocks.o: /usr/include/malloc.h ../include/license.h
prints2blocks.o: ../include/strutil.h ../include/errors.h ../include/memory.h
prints2blocks.o: ../include/residues.h ../include/blastapp.h
prints2blocks.o: /usr/include/limits.h /usr/include/iso/limits_iso.h
prints2blocks.o: ../include/alphabet.h ../include/aabet.h ../include/ntbet.h
prints2blocks.o: ../include/gcode.h ../include/blocks.h ../include/output.h
prints2blocks.o: ../include/sequences.h ../include/matrix.h
prints2blocks.o: ../include/pattern.h ../include/convert.h
prints2blocks.o: ../include/frequency.h ../include/files.h
prints2blocks.o: ../include/protomat.h
lisblk.o: ../include/blocksprogs.h /usr/include/stdlib.h
lisblk.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
lisblk.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
lisblk.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
lisblk.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
lisblk.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
lisblk.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
lisblk.o: /usr/include/iso/string_iso.h /usr/include/math.h
lisblk.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
lisblk.o: /usr/include/unistd.h /usr/include/sys/types.h
lisblk.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
lisblk.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
lisblk.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
lisblk.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
lisblk.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
lisblk.o: /usr/include/iso/ctype_c99.h ../include/global.h
lisblk.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
lisblk.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
lisblk.o: ../include/errors.h ../include/memory.h ../include/residues.h
lisblk.o: ../include/blastapp.h /usr/include/limits.h
lisblk.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
lisblk.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
lisblk.o: ../include/blocks.h ../include/output.h ../include/sequences.h
lisblk.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
lisblk.o: ../include/frequency.h ../include/files.h ../include/protomat.h
coduse.o: ../include/blocksprogs.h /usr/include/stdlib.h
coduse.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
coduse.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
coduse.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
coduse.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
coduse.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
coduse.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
coduse.o: /usr/include/iso/string_iso.h /usr/include/math.h
coduse.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
coduse.o: /usr/include/unistd.h /usr/include/sys/types.h
coduse.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
coduse.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
coduse.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
coduse.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
coduse.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
coduse.o: /usr/include/iso/ctype_c99.h ../include/global.h
coduse.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
coduse.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
coduse.o: ../include/errors.h ../include/memory.h ../include/residues.h
coduse.o: ../include/blastapp.h /usr/include/limits.h
coduse.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
coduse.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
coduse.o: ../include/blocks.h ../include/output.h ../include/sequences.h
coduse.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
coduse.o: ../include/frequency.h ../include/files.h ../include/protomat.h
narrow.o: ../include/blocksprogs.h /usr/include/stdlib.h
narrow.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
narrow.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
narrow.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
narrow.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
narrow.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
narrow.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
narrow.o: /usr/include/iso/string_iso.h /usr/include/math.h
narrow.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
narrow.o: /usr/include/unistd.h /usr/include/sys/types.h
narrow.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
narrow.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
narrow.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
narrow.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
narrow.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
narrow.o: /usr/include/iso/ctype_c99.h ../include/global.h
narrow.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
narrow.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
narrow.o: ../include/errors.h ../include/memory.h ../include/residues.h
narrow.o: ../include/blastapp.h /usr/include/limits.h
narrow.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
narrow.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
narrow.o: ../include/blocks.h ../include/output.h ../include/sequences.h
narrow.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
narrow.o: ../include/frequency.h ../include/files.h ../include/protomat.h
blk2slx.o: ../include/blocksprogs.h /usr/include/stdlib.h
blk2slx.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
blk2slx.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
blk2slx.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
blk2slx.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
blk2slx.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
blk2slx.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
blk2slx.o: /usr/include/iso/string_iso.h /usr/include/math.h
blk2slx.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
blk2slx.o: /usr/include/unistd.h /usr/include/sys/types.h
blk2slx.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
blk2slx.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
blk2slx.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
blk2slx.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
blk2slx.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
blk2slx.o: /usr/include/iso/ctype_c99.h ../include/global.h
blk2slx.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
blk2slx.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
blk2slx.o: ../include/errors.h ../include/memory.h ../include/residues.h
blk2slx.o: ../include/blastapp.h /usr/include/limits.h
blk2slx.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
blk2slx.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
blk2slx.o: ../include/blocks.h ../include/output.h ../include/sequences.h
blk2slx.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
blk2slx.o: ../include/frequency.h ../include/files.h ../include/protomat.h
blkprob.o: ../include/blocksprogs.h /usr/include/stdlib.h
blkprob.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
blkprob.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
blkprob.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
blkprob.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
blkprob.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
blkprob.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
blkprob.o: /usr/include/iso/string_iso.h /usr/include/math.h
blkprob.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
blkprob.o: /usr/include/unistd.h /usr/include/sys/types.h
blkprob.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
blkprob.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
blkprob.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
blkprob.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
blkprob.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
blkprob.o: /usr/include/iso/ctype_c99.h ../include/global.h
blkprob.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
blkprob.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
blkprob.o: ../include/errors.h ../include/memory.h ../include/residues.h
blkprob.o: ../include/blastapp.h /usr/include/limits.h
blkprob.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
blkprob.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
blkprob.o: ../include/blocks.h ../include/output.h ../include/sequences.h
blkprob.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
blkprob.o: ../include/frequency.h ../include/files.h ../include/protomat.h
blocks.o: ../include/global.h /usr/include/stdlib.h
blocks.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
blocks.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
blocks.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
blocks.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
blocks.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
blocks.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
blocks.o: /usr/include/iso/string_iso.h /usr/include/stddef.h
blocks.o: /usr/include/iso/stddef_iso.h /usr/include/ctype.h
blocks.o: /usr/include/iso/ctype_iso.h /usr/include/iso/ctype_c99.h
blocks.o: /usr/include/malloc.h /usr/include/sys/types.h
blocks.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
blocks.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
blocks.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
blocks.o: /usr/include/sys/time.h ../include/license.h ../include/strutil.h
blocks.o: ../include/errors.h ../include/memory.h ../include/blocks.h
blocks.o: ../include/output.h ../include/sequences.h ../include/residues.h
blocks.o: ../include/blastapp.h /usr/include/limits.h
blocks.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
blocks.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
config.o: ../include/global.h /usr/include/stdlib.h
config.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
config.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
config.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
config.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
config.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
config.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
config.o: /usr/include/iso/string_iso.h /usr/include/stddef.h
config.o: /usr/include/iso/stddef_iso.h /usr/include/ctype.h
config.o: /usr/include/iso/ctype_iso.h /usr/include/iso/ctype_c99.h
config.o: /usr/include/malloc.h /usr/include/sys/types.h
config.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
config.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
config.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
config.o: /usr/include/sys/time.h ../include/license.h ../include/strutil.h
config.o: ../include/errors.h ../include/memory.h ../include/files.h
config.o: ../include/sequences.h ../include/pattern.h ../include/options.h
config.o: config.h blimps.h scoring.h lists.h ../include/skiplist.h
convert.o: /usr/include/assert.h /usr/include/math.h
convert.o: /usr/include/iso/math_iso.h /usr/include/sys/feature_tests.h
convert.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
convert.o: /usr/include/iso/math_c99.h ../include/global.h
convert.o: /usr/include/stdlib.h /usr/include/iso/stdlib_iso.h
convert.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
convert.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
convert.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
convert.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
convert.o: /usr/include/iso/string_iso.h /usr/include/stddef.h
convert.o: /usr/include/iso/stddef_iso.h /usr/include/ctype.h
convert.o: /usr/include/iso/ctype_iso.h /usr/include/iso/ctype_c99.h
convert.o: /usr/include/malloc.h /usr/include/sys/types.h
convert.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
convert.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
convert.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
convert.o: /usr/include/sys/time.h ../include/license.h ../include/strutil.h
convert.o: ../include/errors.h ../include/memory.h ../include/options.h
convert.o: ../include/blocks.h ../include/output.h ../include/sequences.h
convert.o: ../include/matrix.h ../include/pattern.h ../include/residues.h
convert.o: ../include/blastapp.h /usr/include/limits.h
convert.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
convert.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
convert.o: ../include/frequency.h ../include/protomat.h ../include/convert.h
convert.o: blimps.h
errors.o: ../include/global.h /usr/include/stdlib.h
errors.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
errors.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
errors.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
errors.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
errors.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
errors.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
errors.o: /usr/include/iso/string_iso.h /usr/include/stddef.h
errors.o: /usr/include/iso/stddef_iso.h /usr/include/ctype.h
errors.o: /usr/include/iso/ctype_iso.h /usr/include/iso/ctype_c99.h
errors.o: /usr/include/malloc.h /usr/include/sys/types.h
errors.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
errors.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
errors.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
errors.o: /usr/include/sys/time.h ../include/license.h ../include/strutil.h
errors.o: ../include/errors.h ../include/memory.h
files.o: ../include/global.h /usr/include/stdlib.h
files.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
files.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
files.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
files.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
files.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
files.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
files.o: /usr/include/iso/string_iso.h /usr/include/stddef.h
files.o: /usr/include/iso/stddef_iso.h /usr/include/ctype.h
files.o: /usr/include/iso/ctype_iso.h /usr/include/iso/ctype_c99.h
files.o: /usr/include/malloc.h /usr/include/sys/types.h
files.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
files.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
files.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
files.o: /usr/include/sys/time.h ../include/license.h ../include/strutil.h
files.o: ../include/errors.h ../include/memory.h ../include/files.h
files.o: ../include/sequences.h
frequency.o: ../include/global.h /usr/include/stdlib.h
frequency.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
frequency.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
frequency.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
frequency.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
frequency.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
frequency.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
frequency.o: /usr/include/iso/string_iso.h /usr/include/stddef.h
frequency.o: /usr/include/iso/stddef_iso.h /usr/include/ctype.h
frequency.o: /usr/include/iso/ctype_iso.h /usr/include/iso/ctype_c99.h
frequency.o: /usr/include/malloc.h /usr/include/sys/types.h
frequency.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
frequency.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
frequency.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
frequency.o: /usr/include/sys/time.h ../include/license.h
frequency.o: ../include/strutil.h ../include/errors.h ../include/memory.h
frequency.o: ../include/blocks.h ../include/output.h ../include/sequences.h
frequency.o: ../include/matrix.h ../include/pattern.h ../include/frequency.h
frequency.o: ../include/convert.h ../include/files.h ../include/residues.h
frequency.o: ../include/blastapp.h /usr/include/limits.h
frequency.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
frequency.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
gcode.o: ../include/global.h /usr/include/stdlib.h
gcode.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
gcode.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
gcode.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
gcode.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
gcode.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
gcode.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
gcode.o: /usr/include/iso/string_iso.h /usr/include/stddef.h
gcode.o: /usr/include/iso/stddef_iso.h /usr/include/ctype.h
gcode.o: /usr/include/iso/ctype_iso.h /usr/include/iso/ctype_c99.h
gcode.o: /usr/include/malloc.h /usr/include/sys/types.h
gcode.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
gcode.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
gcode.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
gcode.o: /usr/include/sys/time.h ../include/license.h ../include/strutil.h
gcode.o: ../include/errors.h ../include/memory.h ../include/residues.h
gcode.o: ../include/blastapp.h /usr/include/limits.h
gcode.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
gcode.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
gcode.o: ../include/sequences.h
lists.o: ../include/global.h /usr/include/stdlib.h
lists.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
lists.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
lists.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
lists.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
lists.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
lists.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
lists.o: /usr/include/iso/string_iso.h /usr/include/stddef.h
lists.o: /usr/include/iso/stddef_iso.h /usr/include/ctype.h
lists.o: /usr/include/iso/ctype_iso.h /usr/include/iso/ctype_c99.h
lists.o: /usr/include/malloc.h /usr/include/sys/types.h
lists.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
lists.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
lists.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
lists.o: /usr/include/sys/time.h ../include/license.h ../include/strutil.h
lists.o: ../include/errors.h ../include/memory.h ../include/blocks.h
lists.o: ../include/output.h ../include/sequences.h ../include/matrix.h
lists.o: ../include/pattern.h lists.h ../include/skiplist.h blimps.h scores.h
matrix.o: ../include/global.h /usr/include/stdlib.h
matrix.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
matrix.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
matrix.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
matrix.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
matrix.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
matrix.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
matrix.o: /usr/include/iso/string_iso.h /usr/include/stddef.h
matrix.o: /usr/include/iso/stddef_iso.h /usr/include/ctype.h
matrix.o: /usr/include/iso/ctype_iso.h /usr/include/iso/ctype_c99.h
matrix.o: /usr/include/malloc.h /usr/include/sys/types.h
matrix.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
matrix.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
matrix.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
matrix.o: /usr/include/sys/time.h ../include/license.h ../include/strutil.h
matrix.o: ../include/errors.h ../include/memory.h ../include/blocks.h
matrix.o: ../include/output.h ../include/sequences.h ../include/matrix.h
matrix.o: ../include/pattern.h ../include/residues.h ../include/blastapp.h
matrix.o: /usr/include/limits.h /usr/include/iso/limits_iso.h
matrix.o: ../include/alphabet.h ../include/aabet.h ../include/ntbet.h
matrix.o: ../include/gcode.h
memory.o: ../include/global.h /usr/include/stdlib.h
memory.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
memory.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
memory.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
memory.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
memory.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
memory.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
memory.o: /usr/include/iso/string_iso.h /usr/include/stddef.h
memory.o: /usr/include/iso/stddef_iso.h /usr/include/ctype.h
memory.o: /usr/include/iso/ctype_iso.h /usr/include/iso/ctype_c99.h
memory.o: /usr/include/malloc.h /usr/include/sys/types.h
memory.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
memory.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
memory.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
memory.o: /usr/include/sys/time.h ../include/license.h ../include/strutil.h
memory.o: ../include/errors.h ../include/memory.h
pattern.o: /usr/include/assert.h ../include/global.h /usr/include/stdlib.h
pattern.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
pattern.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
pattern.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
pattern.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
pattern.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
pattern.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
pattern.o: /usr/include/iso/string_iso.h /usr/include/stddef.h
pattern.o: /usr/include/iso/stddef_iso.h /usr/include/ctype.h
pattern.o: /usr/include/iso/ctype_iso.h /usr/include/iso/ctype_c99.h
pattern.o: /usr/include/malloc.h /usr/include/sys/types.h
pattern.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
pattern.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
pattern.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
pattern.o: /usr/include/sys/time.h ../include/license.h ../include/strutil.h
pattern.o: ../include/errors.h ../include/memory.h ../include/files.h
pattern.o: ../include/blocks.h ../include/output.h ../include/sequences.h
pattern.o: ../include/matrix.h ../include/pattern.h ../include/residues.h
pattern.o: ../include/blastapp.h /usr/include/limits.h
pattern.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
pattern.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
pattern.o: ../include/skiplist.h
scores.o: /usr/include/math.h /usr/include/iso/math_iso.h
scores.o: /usr/include/sys/feature_tests.h /usr/include/sys/ccompile.h
scores.o: /usr/include/sys/isa_defs.h /usr/include/iso/math_c99.h
scores.o: ../include/global.h /usr/include/stdlib.h
scores.o: /usr/include/iso/stdlib_iso.h /usr/include/iso/stdlib_c99.h
scores.o: /usr/include/stdio.h /usr/include/iso/stdio_iso.h
scores.o: /usr/include/sys/va_list.h /usr/include/stdio_tag.h
scores.o: /usr/include/stdio_impl.h /usr/include/iso/stdio_c99.h
scores.o: /usr/include/string.h /usr/include/iso/string_iso.h
scores.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
scores.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
scores.o: /usr/include/iso/ctype_c99.h /usr/include/malloc.h
scores.o: /usr/include/sys/types.h /usr/include/sys/machtypes.h
scores.o: /usr/include/ia32/sys/machtypes.h /usr/include/sys/int_types.h
scores.o: /usr/include/sys/select.h /usr/include/sys/time_impl.h
scores.o: /usr/include/sys/time.h /usr/include/sys/time.h
scores.o: ../include/license.h ../include/strutil.h ../include/errors.h
scores.o: ../include/memory.h ../include/blocks.h ../include/output.h
scores.o: ../include/sequences.h ../include/matrix.h ../include/pattern.h
scores.o: scores.h blimps.h scoring.h lists.h ../include/skiplist.h
scoring.o: /usr/include/math.h /usr/include/iso/math_iso.h
scoring.o: /usr/include/sys/feature_tests.h /usr/include/sys/ccompile.h
scoring.o: /usr/include/sys/isa_defs.h /usr/include/iso/math_c99.h
scoring.o: ../include/global.h /usr/include/stdlib.h
scoring.o: /usr/include/iso/stdlib_iso.h /usr/include/iso/stdlib_c99.h
scoring.o: /usr/include/stdio.h /usr/include/iso/stdio_iso.h
scoring.o: /usr/include/sys/va_list.h /usr/include/stdio_tag.h
scoring.o: /usr/include/stdio_impl.h /usr/include/iso/stdio_c99.h
scoring.o: /usr/include/string.h /usr/include/iso/string_iso.h
scoring.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
scoring.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
scoring.o: /usr/include/iso/ctype_c99.h /usr/include/malloc.h
scoring.o: /usr/include/sys/types.h /usr/include/sys/machtypes.h
scoring.o: /usr/include/ia32/sys/machtypes.h /usr/include/sys/int_types.h
scoring.o: /usr/include/sys/select.h /usr/include/sys/time_impl.h
scoring.o: /usr/include/sys/time.h /usr/include/sys/time.h
scoring.o: ../include/license.h ../include/strutil.h ../include/errors.h
scoring.o: ../include/memory.h ../include/blocks.h ../include/output.h
scoring.o: ../include/sequences.h ../include/matrix.h ../include/pattern.h
scoring.o: ../include/residues.h ../include/blastapp.h /usr/include/limits.h
scoring.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
scoring.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h scoring.h
scoring.o: blimps.h scores.h lists.h ../include/skiplist.h
sequences.o: ../include/global.h /usr/include/stdlib.h
sequences.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
sequences.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
sequences.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
sequences.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
sequences.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
sequences.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
sequences.o: /usr/include/iso/string_iso.h /usr/include/stddef.h
sequences.o: /usr/include/iso/stddef_iso.h /usr/include/ctype.h
sequences.o: /usr/include/iso/ctype_iso.h /usr/include/iso/ctype_c99.h
sequences.o: /usr/include/malloc.h /usr/include/sys/types.h
sequences.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
sequences.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
sequences.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
sequences.o: /usr/include/sys/time.h ../include/license.h
sequences.o: ../include/strutil.h ../include/errors.h ../include/memory.h
sequences.o: ../include/sequences.h ../include/residues.h
sequences.o: ../include/blastapp.h /usr/include/limits.h
sequences.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
sequences.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
sl.o: /usr/include/assert.h /usr/include/sys/time.h ../include/global.h
sl.o: /usr/include/stdlib.h /usr/include/iso/stdlib_iso.h
sl.o: /usr/include/sys/feature_tests.h /usr/include/sys/ccompile.h
sl.o: /usr/include/sys/isa_defs.h /usr/include/iso/stdlib_c99.h
sl.o: /usr/include/stdio.h /usr/include/iso/stdio_iso.h
sl.o: /usr/include/sys/va_list.h /usr/include/stdio_tag.h
sl.o: /usr/include/stdio_impl.h /usr/include/iso/stdio_c99.h
sl.o: /usr/include/string.h /usr/include/iso/string_iso.h
sl.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
sl.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
sl.o: /usr/include/iso/ctype_c99.h /usr/include/malloc.h
sl.o: /usr/include/sys/types.h /usr/include/sys/machtypes.h
sl.o: /usr/include/ia32/sys/machtypes.h /usr/include/sys/int_types.h
sl.o: /usr/include/sys/select.h /usr/include/sys/time_impl.h
sl.o: /usr/include/sys/time.h ../include/license.h ../include/strutil.h
sl.o: ../include/errors.h ../include/memory.h ../include/skiplist.h
strutil.o: ../include/global.h /usr/include/stdlib.h
strutil.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
strutil.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
strutil.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
strutil.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
strutil.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
strutil.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
strutil.o: /usr/include/iso/string_iso.h /usr/include/stddef.h
strutil.o: /usr/include/iso/stddef_iso.h /usr/include/ctype.h
strutil.o: /usr/include/iso/ctype_iso.h /usr/include/iso/ctype_c99.h
strutil.o: /usr/include/malloc.h /usr/include/sys/types.h
strutil.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
strutil.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
strutil.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
strutil.o: /usr/include/sys/time.h ../include/license.h ../include/strutil.h
strutil.o: ../include/errors.h ../include/memory.h
version.o: ../include/global.h /usr/include/stdlib.h
version.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
version.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
version.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
version.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
version.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
version.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
version.o: /usr/include/iso/string_iso.h /usr/include/stddef.h
version.o: /usr/include/iso/stddef_iso.h /usr/include/ctype.h
version.o: /usr/include/iso/ctype_iso.h /usr/include/iso/ctype_c99.h
version.o: /usr/include/malloc.h /usr/include/sys/types.h
version.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
version.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
version.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
version.o: /usr/include/sys/time.h ../include/license.h ../include/strutil.h
version.o: ../include/errors.h ../include/memory.h ../include/version.h
options.o: ../include/global.h /usr/include/stdlib.h
options.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
options.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
options.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
options.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
options.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
options.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
options.o: /usr/include/iso/string_iso.h /usr/include/stddef.h
options.o: /usr/include/iso/stddef_iso.h /usr/include/ctype.h
options.o: /usr/include/iso/ctype_iso.h /usr/include/iso/ctype_c99.h
options.o: /usr/include/malloc.h /usr/include/sys/types.h
options.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
options.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
options.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
options.o: /usr/include/sys/time.h ../include/license.h ../include/strutil.h
options.o: ../include/errors.h ../include/memory.h ../include/options.h
protomat.o: /usr/include/sys/types.h /usr/include/sys/feature_tests.h
protomat.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
protomat.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
protomat.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
protomat.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
protomat.o: /usr/include/sys/time.h /usr/include/dirent.h
protomat.o: /usr/include/sys/dirent.h /usr/include/ctype.h
protomat.o: /usr/include/iso/ctype_iso.h /usr/include/iso/ctype_c99.h
protomat.o: ../include/protomat.h /usr/include/stdlib.h
protomat.o: /usr/include/iso/stdlib_iso.h /usr/include/iso/stdlib_c99.h
protomat.o: /usr/include/stdio.h /usr/include/iso/stdio_iso.h
protomat.o: /usr/include/sys/va_list.h /usr/include/stdio_tag.h
protomat.o: /usr/include/stdio_impl.h /usr/include/iso/stdio_c99.h
protomat.o: /usr/include/string.h /usr/include/iso/string_iso.h
interpro.o: ../include/blocksprogs.h /usr/include/stdlib.h
interpro.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
interpro.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
interpro.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
interpro.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
interpro.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
interpro.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
interpro.o: /usr/include/iso/string_iso.h /usr/include/math.h
interpro.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
interpro.o: /usr/include/unistd.h /usr/include/sys/types.h
interpro.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
interpro.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
interpro.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
interpro.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
interpro.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
interpro.o: /usr/include/iso/ctype_c99.h ../include/global.h
interpro.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
interpro.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
interpro.o: ../include/errors.h ../include/memory.h ../include/residues.h
interpro.o: ../include/blastapp.h /usr/include/limits.h
interpro.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
interpro.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
interpro.o: ../include/blocks.h ../include/output.h ../include/sequences.h
interpro.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
interpro.o: ../include/frequency.h ../include/files.h ../include/protomat.h
pssmdist.o: ../include/blocksprogs.h /usr/include/stdlib.h
pssmdist.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
pssmdist.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
pssmdist.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
pssmdist.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
pssmdist.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
pssmdist.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
pssmdist.o: /usr/include/iso/string_iso.h /usr/include/math.h
pssmdist.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
pssmdist.o: /usr/include/unistd.h /usr/include/sys/types.h
pssmdist.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
pssmdist.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
pssmdist.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
pssmdist.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
pssmdist.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
pssmdist.o: /usr/include/iso/ctype_c99.h ../include/global.h
pssmdist.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
pssmdist.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
pssmdist.o: ../include/errors.h ../include/memory.h ../include/residues.h
pssmdist.o: ../include/blastapp.h /usr/include/limits.h
pssmdist.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
pssmdist.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
pssmdist.o: ../include/blocks.h ../include/output.h ../include/sequences.h
pssmdist.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
pssmdist.o: ../include/frequency.h ../include/files.h ../include/protomat.h
pssmBL.o: ../include/blocksprogs.h /usr/include/stdlib.h
pssmBL.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
pssmBL.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
pssmBL.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
pssmBL.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
pssmBL.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
pssmBL.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
pssmBL.o: /usr/include/iso/string_iso.h /usr/include/math.h
pssmBL.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
pssmBL.o: /usr/include/unistd.h /usr/include/sys/types.h
pssmBL.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
pssmBL.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
pssmBL.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
pssmBL.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
pssmBL.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
pssmBL.o: /usr/include/iso/ctype_c99.h ../include/global.h
pssmBL.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
pssmBL.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
pssmBL.o: ../include/errors.h ../include/memory.h ../include/residues.h
pssmBL.o: ../include/blastapp.h /usr/include/limits.h
pssmBL.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
pssmBL.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
pssmBL.o: ../include/blocks.h ../include/output.h ../include/sequences.h
pssmBL.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
pssmBL.o: ../include/frequency.h ../include/files.h ../include/protomat.h
papssm.o: ../include/blocksprogs.h /usr/include/stdlib.h
papssm.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
papssm.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
papssm.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
papssm.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
papssm.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
papssm.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
papssm.o: /usr/include/iso/string_iso.h /usr/include/math.h
papssm.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
papssm.o: /usr/include/unistd.h /usr/include/sys/types.h
papssm.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
papssm.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
papssm.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
papssm.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
papssm.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
papssm.o: /usr/include/iso/ctype_c99.h ../include/global.h
papssm.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
papssm.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
papssm.o: ../include/errors.h ../include/memory.h ../include/residues.h
papssm.o: ../include/blastapp.h /usr/include/limits.h
papssm.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
papssm.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
papssm.o: ../include/blocks.h ../include/output.h ../include/sequences.h
papssm.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
papssm.o: ../include/frequency.h ../include/files.h ../include/protomat.h
papssm.o: blimps.h
matrix_logob.o: /usr/include/sys/types.h /usr/include/sys/feature_tests.h
matrix_logob.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
matrix_logob.o: /usr/include/sys/machtypes.h
matrix_logob.o: /usr/include/ia32/sys/machtypes.h
matrix_logob.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
matrix_logob.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
matrix_logob.o: /usr/include/sys/time.h /usr/include/sys/stat.h
matrix_logob.o: /usr/include/sys/stat_impl.h ../include/blocksprogs.h
matrix_logob.o: /usr/include/stdlib.h /usr/include/iso/stdlib_iso.h
matrix_logob.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
matrix_logob.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
matrix_logob.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
matrix_logob.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
matrix_logob.o: /usr/include/iso/string_iso.h /usr/include/math.h
matrix_logob.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
matrix_logob.o: /usr/include/unistd.h /usr/include/sys/unistd.h
matrix_logob.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
matrix_logob.o: /usr/include/iso/ctype_c99.h ../include/global.h
matrix_logob.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
matrix_logob.o: /usr/include/malloc.h ../include/license.h
matrix_logob.o: ../include/strutil.h ../include/errors.h ../include/memory.h
matrix_logob.o: ../include/residues.h ../include/blastapp.h
matrix_logob.o: /usr/include/limits.h /usr/include/iso/limits_iso.h
matrix_logob.o: ../include/alphabet.h ../include/aabet.h ../include/ntbet.h
matrix_logob.o: ../include/gcode.h ../include/blocks.h ../include/output.h
matrix_logob.o: ../include/sequences.h ../include/matrix.h
matrix_logob.o: ../include/pattern.h ../include/convert.h
matrix_logob.o: ../include/frequency.h ../include/files.h
matrix_logob.o: ../include/protomat.h
makelogob.o: p2c.h /usr/include/stdio.h /usr/include/sys/feature_tests.h
makelogob.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
makelogob.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
makelogob.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
makelogob.o: /usr/include/iso/stdio_c99.h /usr/include/stddef.h
makelogob.o: /usr/include/iso/stddef_iso.h /usr/include/stdlib.h
makelogob.o: /usr/include/iso/stdlib_iso.h /usr/include/iso/stdlib_c99.h
makelogob.o: /usr/include/string.h /usr/include/iso/string_iso.h
makelogob.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
makelogob.o: /usr/include/iso/ctype_c99.h /usr/include/math.h
makelogob.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
makelogob.o: /usr/include/setjmp.h /usr/include/iso/setjmp_iso.h
makelogob.o: /usr/include/assert.h
blocks_search.o: /usr/include/stdio.h /usr/include/sys/feature_tests.h
blocks_search.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
blocks_search.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
blocks_search.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
blocks_search.o: /usr/include/iso/stdio_c99.h /usr/include/stdlib.h
blocks_search.o: /usr/include/iso/stdlib_iso.h /usr/include/iso/stdlib_c99.h
blocks_search.o: ../include/global.h /usr/include/string.h
blocks_search.o: /usr/include/iso/string_iso.h /usr/include/stddef.h
blocks_search.o: /usr/include/iso/stddef_iso.h /usr/include/ctype.h
blocks_search.o: /usr/include/iso/ctype_iso.h /usr/include/iso/ctype_c99.h
blocks_search.o: /usr/include/malloc.h /usr/include/sys/types.h
blocks_search.o: /usr/include/sys/machtypes.h
blocks_search.o: /usr/include/ia32/sys/machtypes.h
blocks_search.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
blocks_search.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
blocks_search.o: /usr/include/sys/time.h ../include/license.h
blocks_search.o: ../include/strutil.h ../include/errors.h ../include/memory.h
blocks_search.o: /usr/include/unistd.h /usr/include/sys/unistd.h
LAMA_search.o: ../include/blocksprogs.h /usr/include/stdlib.h
LAMA_search.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
LAMA_search.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
LAMA_search.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
LAMA_search.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
LAMA_search.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
LAMA_search.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
LAMA_search.o: /usr/include/iso/string_iso.h /usr/include/math.h
LAMA_search.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
LAMA_search.o: /usr/include/unistd.h /usr/include/sys/types.h
LAMA_search.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
LAMA_search.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
LAMA_search.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
LAMA_search.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
LAMA_search.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
LAMA_search.o: /usr/include/iso/ctype_c99.h ../include/global.h
LAMA_search.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
LAMA_search.o: /usr/include/malloc.h ../include/license.h
LAMA_search.o: ../include/strutil.h ../include/errors.h ../include/memory.h
LAMA_search.o: ../include/residues.h ../include/blastapp.h
LAMA_search.o: /usr/include/limits.h /usr/include/iso/limits_iso.h
LAMA_search.o: ../include/alphabet.h ../include/aabet.h ../include/ntbet.h
LAMA_search.o: ../include/gcode.h ../include/blocks.h ../include/output.h
LAMA_search.o: ../include/sequences.h ../include/matrix.h
LAMA_search.o: ../include/pattern.h ../include/convert.h
LAMA_search.o: ../include/frequency.h ../include/files.h
LAMA_search.o: ../include/protomat.h
block_vis.o: ../include/blocksprogs.h /usr/include/stdlib.h
block_vis.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
block_vis.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
block_vis.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
block_vis.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
block_vis.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
block_vis.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
block_vis.o: /usr/include/iso/string_iso.h /usr/include/math.h
block_vis.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
block_vis.o: /usr/include/unistd.h /usr/include/sys/types.h
block_vis.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
block_vis.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
block_vis.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
block_vis.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
block_vis.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
block_vis.o: /usr/include/iso/ctype_c99.h ../include/global.h
block_vis.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
block_vis.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
block_vis.o: ../include/errors.h ../include/memory.h ../include/residues.h
block_vis.o: ../include/blastapp.h /usr/include/limits.h
block_vis.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
block_vis.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
block_vis.o: ../include/blocks.h ../include/output.h ../include/sequences.h
block_vis.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
block_vis.o: ../include/frequency.h ../include/files.h ../include/protomat.h
block_vis.o: blockmap.h
format_block.o: ../include/blocksprogs.h /usr/include/stdlib.h
format_block.o: /usr/include/iso/stdlib_iso.h
format_block.o: /usr/include/sys/feature_tests.h /usr/include/sys/ccompile.h
format_block.o: /usr/include/sys/isa_defs.h /usr/include/iso/stdlib_c99.h
format_block.o: /usr/include/stdio.h /usr/include/iso/stdio_iso.h
format_block.o: /usr/include/sys/va_list.h /usr/include/stdio_tag.h
format_block.o: /usr/include/stdio_impl.h /usr/include/iso/stdio_c99.h
format_block.o: /usr/include/string.h /usr/include/iso/string_iso.h
format_block.o: /usr/include/math.h /usr/include/iso/math_iso.h
format_block.o: /usr/include/iso/math_c99.h /usr/include/unistd.h
format_block.o: /usr/include/sys/types.h /usr/include/sys/machtypes.h
format_block.o: /usr/include/ia32/sys/machtypes.h
format_block.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
format_block.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
format_block.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
format_block.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
format_block.o: /usr/include/iso/ctype_c99.h ../include/global.h
format_block.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
format_block.o: /usr/include/malloc.h ../include/license.h
format_block.o: ../include/strutil.h ../include/errors.h ../include/memory.h
format_block.o: ../include/residues.h ../include/blastapp.h
format_block.o: /usr/include/limits.h /usr/include/iso/limits_iso.h
format_block.o: ../include/alphabet.h ../include/aabet.h ../include/ntbet.h
format_block.o: ../include/gcode.h ../include/blocks.h ../include/output.h
format_block.o: ../include/sequences.h ../include/matrix.h
format_block.o: ../include/pattern.h ../include/convert.h
format_block.o: ../include/frequency.h ../include/files.h
format_block.o: ../include/protomat.h
biassed_blocks_finder.o: ../include/blocksprogs.h /usr/include/stdlib.h
biassed_blocks_finder.o: /usr/include/iso/stdlib_iso.h
biassed_blocks_finder.o: /usr/include/sys/feature_tests.h
biassed_blocks_finder.o: /usr/include/sys/ccompile.h
biassed_blocks_finder.o: /usr/include/sys/isa_defs.h
biassed_blocks_finder.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
biassed_blocks_finder.o: /usr/include/iso/stdio_iso.h
biassed_blocks_finder.o: /usr/include/sys/va_list.h /usr/include/stdio_tag.h
biassed_blocks_finder.o: /usr/include/stdio_impl.h
biassed_blocks_finder.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
biassed_blocks_finder.o: /usr/include/iso/string_iso.h /usr/include/math.h
biassed_blocks_finder.o: /usr/include/iso/math_iso.h
biassed_blocks_finder.o: /usr/include/iso/math_c99.h /usr/include/unistd.h
biassed_blocks_finder.o: /usr/include/sys/types.h
biassed_blocks_finder.o: /usr/include/sys/machtypes.h
biassed_blocks_finder.o: /usr/include/ia32/sys/machtypes.h
biassed_blocks_finder.o: /usr/include/sys/int_types.h
biassed_blocks_finder.o: /usr/include/sys/select.h
biassed_blocks_finder.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
biassed_blocks_finder.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
biassed_blocks_finder.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
biassed_blocks_finder.o: /usr/include/iso/ctype_c99.h ../include/global.h
biassed_blocks_finder.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
biassed_blocks_finder.o: /usr/include/malloc.h ../include/license.h
biassed_blocks_finder.o: ../include/strutil.h ../include/errors.h
biassed_blocks_finder.o: ../include/memory.h ../include/residues.h
biassed_blocks_finder.o: ../include/blastapp.h /usr/include/limits.h
biassed_blocks_finder.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
biassed_blocks_finder.o: ../include/aabet.h ../include/ntbet.h
biassed_blocks_finder.o: ../include/gcode.h ../include/blocks.h
biassed_blocks_finder.o: ../include/output.h ../include/sequences.h
biassed_blocks_finder.o: ../include/matrix.h ../include/pattern.h
biassed_blocks_finder.o: ../include/convert.h ../include/frequency.h
biassed_blocks_finder.o: ../include/files.h ../include/protomat.h
htmlize-LAMA.o: /usr/include/stdlib.h /usr/include/iso/stdlib_iso.h
htmlize-LAMA.o: /usr/include/sys/feature_tests.h /usr/include/sys/ccompile.h
htmlize-LAMA.o: /usr/include/sys/isa_defs.h /usr/include/iso/stdlib_c99.h
htmlize-LAMA.o: /usr/include/stdio.h /usr/include/iso/stdio_iso.h
htmlize-LAMA.o: /usr/include/sys/va_list.h /usr/include/stdio_tag.h
htmlize-LAMA.o: /usr/include/stdio_impl.h /usr/include/iso/stdio_c99.h
show_aligned_blocks.o: ../include/blocksprogs.h /usr/include/stdlib.h
show_aligned_blocks.o: /usr/include/iso/stdlib_iso.h
show_aligned_blocks.o: /usr/include/sys/feature_tests.h
show_aligned_blocks.o: /usr/include/sys/ccompile.h
show_aligned_blocks.o: /usr/include/sys/isa_defs.h
show_aligned_blocks.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
show_aligned_blocks.o: /usr/include/iso/stdio_iso.h
show_aligned_blocks.o: /usr/include/sys/va_list.h /usr/include/stdio_tag.h
show_aligned_blocks.o: /usr/include/stdio_impl.h /usr/include/iso/stdio_c99.h
show_aligned_blocks.o: /usr/include/string.h /usr/include/iso/string_iso.h
show_aligned_blocks.o: /usr/include/math.h /usr/include/iso/math_iso.h
show_aligned_blocks.o: /usr/include/iso/math_c99.h /usr/include/unistd.h
show_aligned_blocks.o: /usr/include/sys/types.h /usr/include/sys/machtypes.h
show_aligned_blocks.o: /usr/include/ia32/sys/machtypes.h
show_aligned_blocks.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
show_aligned_blocks.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
show_aligned_blocks.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
show_aligned_blocks.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
show_aligned_blocks.o: /usr/include/iso/ctype_c99.h ../include/global.h
show_aligned_blocks.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
show_aligned_blocks.o: /usr/include/malloc.h ../include/license.h
show_aligned_blocks.o: ../include/strutil.h ../include/errors.h
show_aligned_blocks.o: ../include/memory.h ../include/residues.h
show_aligned_blocks.o: ../include/blastapp.h /usr/include/limits.h
show_aligned_blocks.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
show_aligned_blocks.o: ../include/aabet.h ../include/ntbet.h
show_aligned_blocks.o: ../include/gcode.h ../include/blocks.h
show_aligned_blocks.o: ../include/output.h ../include/sequences.h
show_aligned_blocks.o: ../include/matrix.h ../include/pattern.h
show_aligned_blocks.o: ../include/convert.h ../include/frequency.h
show_aligned_blocks.o: ../include/files.h ../include/protomat.h
blk2mot.o: ../include/blocksprogs.h /usr/include/stdlib.h
blk2mot.o: /usr/include/iso/stdlib_iso.h /usr/include/sys/feature_tests.h
blk2mot.o: /usr/include/sys/ccompile.h /usr/include/sys/isa_defs.h
blk2mot.o: /usr/include/iso/stdlib_c99.h /usr/include/stdio.h
blk2mot.o: /usr/include/iso/stdio_iso.h /usr/include/sys/va_list.h
blk2mot.o: /usr/include/stdio_tag.h /usr/include/stdio_impl.h
blk2mot.o: /usr/include/iso/stdio_c99.h /usr/include/string.h
blk2mot.o: /usr/include/iso/string_iso.h /usr/include/math.h
blk2mot.o: /usr/include/iso/math_iso.h /usr/include/iso/math_c99.h
blk2mot.o: /usr/include/unistd.h /usr/include/sys/types.h
blk2mot.o: /usr/include/sys/machtypes.h /usr/include/ia32/sys/machtypes.h
blk2mot.o: /usr/include/sys/int_types.h /usr/include/sys/select.h
blk2mot.o: /usr/include/sys/time_impl.h /usr/include/sys/time.h
blk2mot.o: /usr/include/sys/time.h /usr/include/sys/unistd.h
blk2mot.o: /usr/include/ctype.h /usr/include/iso/ctype_iso.h
blk2mot.o: /usr/include/iso/ctype_c99.h ../include/global.h
blk2mot.o: /usr/include/stddef.h /usr/include/iso/stddef_iso.h
blk2mot.o: /usr/include/malloc.h ../include/license.h ../include/strutil.h
blk2mot.o: ../include/errors.h ../include/memory.h ../include/residues.h
blk2mot.o: ../include/blastapp.h /usr/include/limits.h
blk2mot.o: /usr/include/iso/limits_iso.h ../include/alphabet.h
blk2mot.o: ../include/aabet.h ../include/ntbet.h ../include/gcode.h
blk2mot.o: ../include/blocks.h ../include/output.h ../include/sequences.h
blk2mot.o: ../include/matrix.h ../include/pattern.h ../include/convert.h
blk2mot.o: ../include/frequency.h ../include/files.h ../include/protomat.h
