MULTIMAT: (C) Copyright 1991 by Fred Hutchinson Cancer Research Center
Version  6/11/00.1

Search results will be compared with example.blocks
Cannot open file none;
search results will not be compared with true positive list.

Reading exampleA.blk.bli...
89 scores read from exampleA

Reading exampleB.blk.bli...
89 scores read from exampleB

Reading exampleC.blk.bli...
89 scores read from exampleC

Reading exampleD.blk.bli...
89 scores read from exampleD

Reading exampleE.blk.bli...
89 scores read from exampleE
AC family name = example


Top 1000 sequences sorted by maximum normalized score:
(the normalized score is the Score divided by the
99.5 score in the block if available, or by the
smallest Score in the search results file for the block)

Block     Rank Frame Score      Location(aa) Sequence
1.----------------------------------------------------------------------------------
exampleA     2   0    1496       53-     98 TC1A_CAEEL|P03934    TRANSPOSABLE ELEMEN
exampleB     2   0    2012      122-    132 TC1A_CAEEL|P03934    TRANSPOSABLE ELEMEN
exampleC     2   0    2130      172-    182 TC1A_CAEEL|P03934    TRANSPOSABLE ELEMEN
exampleD     1   0    2306      201-    215 TC1A_CAEEL|P03934    TRANSPOSABLE ELEMEN
exampleE     3   0    1727      237-    273 TC1A_CAEEL|P03934    TRANSPOSABLE ELEMEN

P<2.9e-09 for exampleB exampleA exampleC exampleE in support of exampleD
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
TC1A_CAEEL|P03934    AAAAAAAAAAAA::::::BBB::::::::::CCC:::::DDDD::::::EEEEEEEEEE


exampleA              <->A    (52,155):52                                      
TC1A_CAEEL               53   KKPFISKKNRMARVAWAKAHLRWGRQEWAKHIWSDESKFNLFGSDG   
                              ||||||||||||||||||||||||||||||||||||||||||||||   
TC1A_CAEEL|P03934        53   KKPFISKKNRMARVAWAKAHLRWGRQEWAKHIWSDESKFNLFGSDG   

exampleB             A<->B    (20,24):23    
TC1A_CAEBR              122   GGGSVMVWGCF   
                              |||||||||||   
TC1A_CAEEL|P03934       122   GGGSVMVWGCF   

exampleC             B<->C    (39,40):39    
TC1A_CAEEL              172   FVFQQDNDPKH   
                              |||||||||||   
TC1A_CAEEL|P03934       172   FVFQQDNDPKH   

exampleD             C<->D    (18,18):18        
TC1A_CAEEL              201   WPSQSPDLNPIEHLW   
                              |||||||||||||||   
TC1A_CAEEL|P03934       201   WPSQSPDLNPIEHLW   

exampleE             D<->E    (17,23):21                              
TC1A_CAEEL              237   LENAWKAIPMSVIHKLIDSMPRRCQAVIDANGYATKY   
                              |||||||||||||||||||||||||||||||||||||   
TC1A_CAEEL|P03934       237   LENAWKAIPMSVIHKLIDSMPRRCQAVIDANGYATKY   

2.----------------------------------------------------------------------------------
exampleA     3   0    1478       53-     98 TC2A_CAEBR|Q04202    TRANSPOSABLE ELEMEN
exampleB     3   0    2012      122-    132 TC2A_CAEBR|Q04202    TRANSPOSABLE ELEMEN
exampleC     3   0    2130      172-    182 TC2A_CAEBR|Q04202    TRANSPOSABLE ELEMEN
exampleD     2   0    2306      201-    215 TC2A_CAEBR|Q04202    TRANSPOSABLE ELEMEN
exampleE     2   0    1734      237-    273 TC2A_CAEBR|Q04202    TRANSPOSABLE ELEMEN

P<3.2e-08 for exampleD exampleA exampleB exampleC in support of exampleE
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
TC2A_CAEBR|Q04202    <AAAAAAAAAAAA::::::BBB::::::::::CCC:::::DDDD::::::EEEEEEEEEE


exampleA              <->A    (52,155):52                                      
TC2A_CAEBR               53   KKPSISKKNRIARVAWARAHLHWGRQDWANHVFSDESKFNLFGTDG   
                              ||||||||||||||||||||||||||||||||||||||||||||||   
TC2A_CAEBR|Q04202        53   KKPSISKKNRIARVAWARAHLHWGRQDWANHVFSDESKFNLFGTDG   

exampleB             A<->B    (20,24):23    
TC1A_CAEBR              122   GGGSVMVWGCF   
                              |||||||||||   
TC2A_CAEBR|Q04202       122   GGGSVMVWGCF   

exampleC             B<->C    (39,40):39    
TC1A_CAEEL              172   FVFQQDNDPKH   
                              |||||||||||   
TC2A_CAEBR|Q04202       172   FVFQQDNDPKH   

exampleD             C<->D    (18,18):18        
TC1A_CAEEL              201   WPSQSPDLNPIEHLW   
                              |||||||||||||||   
TC2A_CAEBR|Q04202       201   WPSQSPDLNPIEHLW   

exampleE             D<->E    (17,23):21                              
TC2A_CAEBR              237   LQDVWQAIPMSVIDTILDSMPRRCQTVIDAKGFPTKY   
                              |||||||||||||||||||||||||||||||||||||   
TC2A_CAEBR|Q04202       237   LQDVWQAIPMSVIDTILDSMPRRCQTVIDAKGFPTKY   

3.----------------------------------------------------------------------------------
exampleA     1   0    1496       53-     98 TC1A_CAEBR|P35072    TRANSPOSABLE ELEMEN
exampleB     1   0    2012      122-    132 TC1A_CAEBR|P35072    TRANSPOSABLE ELEMEN
exampleC     1   0    2164      172-    182 TC1A_CAEBR|P35072    TRANSPOSABLE ELEMEN
exampleD     3   0    2292      201-    215 TC1A_CAEBR|P35072    TRANSPOSABLE ELEMEN
exampleE     1   0    1736      237-    273 TC1A_CAEBR|P35072    TRANSPOSABLE ELEMEN

P<1.8e-09 for exampleB exampleC exampleE exampleD in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
TC1A_CAEBR|P35072    AAAAAAAAAAAA::::::BBB::::::::::CCC:::::DDDD::::::EEEEEEEEEE


exampleA              <->A    (52,155):52                                      
TC1A_CAEBR               53   KKPLVSLKNRKARVEWAKQHLSWGPREWANHIWSDESKFNMFGTDG   
                              ||||||||||||||||||||||||||||||||||||||||||||||   
TC1A_CAEBR|P35072        53   KKPLVSLKNRKARVEWAKQHLSWGPREWANHIWSDESKFNMFGTDG   

exampleB             A<->B    (20,24):23    
TC1A_CAEBR              122   GGGSVMVWGCF   
                              |||||||||||   
TC1A_CAEBR|P35072       122   GGGSVMVWGCF   

exampleC             B<->C    (39,40):39    
TC1A_CAEBR              172   WVFQQDNDPKH   
                              |||||||||||   
TC1A_CAEBR|P35072       172   WVFQQDNDPKH   

exampleD             C<->D    (18,18):18        
TC1A_CAEBR              201   WPSQSPDLNPIEHMW   
                              |||||||||||||||   
TC1A_CAEBR|P35072       201   WPSQSPDLNPIEHMW   

exampleE             D<->E    (17,23):21                              
TC1A_CAEBR              237   LEAAWKSIPMTVVQTLLESMPRRCKAVIDAKGYPTKY   
                              |||||||||||||||||||||||||||||||||||||   
TC1A_CAEBR|P35072       237   LEAAWKSIPMTVVQTLLESMPRRCKAVIDAKGYPTKY   

4.----------------------------------------------------------------------------------
exampleA     4   0    1371      110-    155 TC3A_CAEEL|P34257    TRANSPOSABLE ELEMEN
exampleB     4   0    1886      176-    186 TC3A_CAEEL|P34257    TRANSPOSABLE ELEMEN
exampleC     4   0    2007      226-    236 TC3A_CAEEL|P34257    TRANSPOSABLE ELEMEN
exampleD     4   0    2279      255-    269 TC3A_CAEEL|P34257    TRANSPOSABLE ELEMEN
exampleE     4   0    1632      293-    329 TC3A_CAEEL|P34257    TRANSPOSABLE ELEMEN

P<7.3e-08 for exampleB exampleC exampleD exampleE in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
TC3A_CAEEL|P34257    AAAAAAAAAAAA:::::BBB::::::::::CCC:::::DDDD::::::EEEEEEEEEE


exampleA              <->A    (52,155):109                                     
TC3A_CAEEL              110   KLRPAPLLSADHKLKRLEFAKNNMGTNWSKVVFSDEKKFNLDGPDG   
                              ||||||||||||||||||||||||||||||||||||||||||||||   
TC3A_CAEEL|P34257       110   KLRPAPLLSADHKLKRLEFAKNNMGTNWSKVVFSDEKKFNLDGPDG   

exampleB             A<->B    (20,24):20    
TC3A_CAEEL              176   GGGTVMVWGAF   
                              |||||||||||   
TC3A_CAEEL|P34257       176   GGGTVMVWGAF   

exampleC             B<->C    (39,40):39    
TC3A_CAEEL              226   FRFQQDNATIH   
                              |||||||||||   
TC3A_CAEEL|P34257       226   FRFQQDNATIH   

exampleD             C<->D    (18,18):18        
TC3A_CAEEL              255   WPARSPDLNPIENLW   
                              |||||||||||||||   
TC3A_CAEEL|P34257       255   WPARSPDLNPIENLW   

exampleE             D<->E    (17,23):23                              
TC3A_CAEEL              293   ILDAWKSIPDNQLKSLVRSMEDRLIEIIRTQGNPINY   
                              |||||||||||||||||||||||||||||||||||||   
TC3A_CAEEL|P34257       293   ILDAWKSIPDNQLKSLVRSMEDRLIEIIRTQGNPINY   

5.----------------------------------------------------------------------------------
exampleA    55   0    1007      171-    216 CYRG_MOUSE|P34902    CYTOKINE RECEPTOR C
exampleB    82   0    1062      303-    313 CYRG_MOUSE|P34902    CYTOKINE RECEPTOR C
exampleC    51   0    1152      128-    138 CYRG_MOUSE|P34902    CYTOKINE RECEPTOR C
exampleD     5   0    1429      283-    297 CYRG_MOUSE|P34902    CYTOKINE RECEPTOR C
exampleE    81   0    1046      145-    181 CYRG_MOUSE|P34902    CYTOKINE RECEPTOR C

P<  0.31 for exampleA in support of exampleD
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
CYRG_MOUSE|P34902    <::::::::AAAAAAAAAAAA::::::::::::::::::DDDD
CYRG_MOUSE|P34902                                                                                    BBB                                                                                  BBB


exampleA              <->A    (52,155):170                                     
Minos                   156   EKPLLTLRQKKKRLQWARERMSWTQRQWDTIIFSDEAKFDVSVGDT   
                              |        |   ||      |   | |   |   |  |     |    
CYRG_MOUSE|P34902       171   ELRwkSrhiKercLQyLvQYrSNrdRsWtelIvnhEprFsLpsvDe   

exampleD             A<->D    (99,104):66       
TC3A_CAEEL              255   WPARSPDLNPIENLW   
                              |  | |   || ||    
CYRG_MOUSE|P34902       283   WleRmPpipPIkNLe   

6.----------------------------------------------------------------------------------
exampleA    76   0    1003      566-    611 RPOC_TREPA|O83270    DNA-DIRECTED RNA PO
exampleB     6   0    1326       51-     61 RPOC_TREPA|O83270    DNA-DIRECTED RNA PO
exampleC    26   0    1227     1278-   1288 RPOC_TREPA|O83270    DNA-DIRECTED RNA PO
exampleD     6   0    1413      231-    245 RPOC_TREPA|O83270    DNA-DIRECTED RNA PO
exampleE    37   0    1091      660-    696 RPOC_TREPA|O83270    DNA-DIRECTED RNA PO

No P-value computed for single block hits.

exampleD              <->D    (197,305):230     
TC1A_CAEEL              201   WPSQSPDLNPIEHLW   
                               |   ||| |   |    
RPOC_TREPA|O83270       231   iPviPPDLrPmvqLd   

7.----------------------------------------------------------------------------------
exampleA     7   0    1035      866-    911 RPOD_ORYSA|P12093    DNA-DIRECTED RNA PO
exampleB    43   0    1193     1091-   1101 RPOD_ORYSA|P12093    DNA-DIRECTED RNA PO
exampleC    12   0    1303      494-    504 RPOD_ORYSA|P12093    DNA-DIRECTED RNA PO
exampleD     7   0    1400     1320-   1334 RPOD_ORYSA|P12093    DNA-DIRECTED RNA PO
exampleE    23   0    1106      889-    925 RPOD_ORYSA|P12093    DNA-DIRECTED RNA PO

No P-value computed for single block hits.

exampleA              <->A    (52,155):865                                     
TC3A_CAEEL              110   KLRPAPLLSADHKLKRLEFAKNNMGTNWSKVVFSDEKKFNLDGPDG   
                                   ||       |      |     | |   | || | |  |     
RPOD_ORYSA|P12093       866   ggsLIPLereKKdsKesKkReNWvyvQWkKILkSkEKyFvLvrPav   

8.----------------------------------------------------------------------------------
exampleA    26   0    1014      159-    204 MAOM_AMAHP|P37224    MALATE OXIDOREDUCTA
exampleB    80   0    1094      199-    209 MAOM_AMAHP|P37224    MALATE OXIDOREDUCTA
exampleC    55   0    1130      458-    468 MAOM_AMAHP|P37224    MALATE OXIDOREDUCTA
exampleD     8   0    1390      277-    291 MAOM_AMAHP|P37224    MALATE OXIDOREDUCTA
exampleE    51   0    1078      419-    455 MAOM_AMAHP|P37224    MALATE OXIDOREDUCTA

P< 0.088 for exampleA in support of exampleD
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
MAOM_AMAHP|P37224    <:::::::AAAAAAAAAAAA:::::::::::::::::::DDDD
MAOM_AMAHP|P37224                                                        BBB                                                       EEEEEEEEEE CCC                                                      BBB                                                       EEEEEEEEEE CCC


exampleA              <->A    (52,155):158                                     
HB1                      98   KVPLPSPRHIKARLSLAKTYLNWPVSKWRNILWTDGSKIMLFGGTG   
                                |         |        |||      |  |||| |   |  |   
MAOM_AMAHP|P37224       159   rrPrgmyfSsDdRgEmmsmvyNWPaEQvDmIVvTDGSrIlglGdlG   

exampleD             A<->D    (99,104):72       
Minos                   304   WPSNSPDLSPIENIW   
                              ||        | | |   
MAOM_AMAHP|P37224       277   WPnvivqfedIqNkW   

9.----------------------------------------------------------------------------------
exampleA    25   0    1016       65-    110 TYRA_HAEIN|P43902    CHORISMATE MUTASE (
exampleB    60   0    1131      229-    239 TYRA_HAEIN|P43902    CHORISMATE MUTASE (
exampleC     5   0    1379      238-    248 TYRA_HAEIN|P43902    CHORISMATE MUTASE (
exampleD    33   0    1260      310-    324 TYRA_HAEIN|P43902    CHORISMATE MUTASE (
exampleE    17   0    1111       61-     97 TYRA_HAEIN|P43902    CHORISMATE MUTASE (

P<   0.1 for exampleA in support of exampleC
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
TYRA_HAEIN|P43902    <::::::::::::::::::::::::::::::CCC
TYRA_HAEIN|P43902                                                                BBB                  DDDD                                                              BBB                  DDDD


exampleA              <->A    (52,155):64                                      
TC3A_CAEEL              110   KLRPAPLLSADHKLKRLEFAKNNMGTNWSKVVFSDEKKFNLDGPDG   
                              |      |  |           |      |   ||  |    |  |   
TYRA_HAEIN|P43902        65   KagisadLieDvlrRFmREsyaNenQFgFKtInSDihKIvIvGGYG   

exampleC             A<->C    (70,75):127   
TC3A_CAEEL              226   FRFQQDNATIH   
                                  | ||| |   
TYRA_HAEIN|P43902       238   akiYQtNATeH   

10.----------------------------------------------------------------------------------
exampleA    14   0    1029       54-     99 GLGA_METJA|Q59001    PROBABLE GLYCOGEN S
exampleB    15   0    1249      478-    488 GLGA_METJA|Q59001    PROBABLE GLYCOGEN S
exampleC     6   0    1370      450-    460 GLGA_METJA|Q59001    PROBABLE GLYCOGEN S
exampleD    40   0    1225      474-    488 GLGA_METJA|Q59001    PROBABLE GLYCOGEN S
exampleE     9   0    1137       93-    129 GLGA_METJA|Q59001    PROBABLE GLYCOGEN S

P< 0.032 for exampleD in support of exampleC
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
GLGA_METJA|Q59001    <::::::::::::::::::::::::::::::CCC:::DDDD
GLGA_METJA|Q59001                                                                                                                                  BBB                                                                                                                                BBB


exampleC              <->C    (168,276):449 
HB1                     218   WTFQQDNDQKR   
                              |||   |       
GLGA_METJA|Q59001       450   WTFYklNeiCm   

exampleD             C<->D    (18,18):13        
Minos                   304   WPSNSPDLSPIENIW   
                                 |||      |     
GLGA_METJA|Q59001       474   ydeNSPlsmmmkNcY   

11.----------------------------------------------------------------------------------
exampleA    54   0    1008     1587-   1632 PPS2_BACSU|P39846    PEPTIDE SYNTHETASE 
exampleB    22   0    1225     2111-   2121 PPS2_BACSU|P39846    PEPTIDE SYNTHETASE 
exampleC     7   0    1351     2100-   2110 PPS2_BACSU|P39846    PEPTIDE SYNTHETASE 
exampleD    19   0    1298     1344-   1358 PPS2_BACSU|P39846    PEPTIDE SYNTHETASE 
exampleE    20   0    1109      751-    787 PPS2_BACSU|P39846    PEPTIDE SYNTHETASE 

No P-value computed for single block hits.

exampleC              <->C    (168,276):2099
Minos                   275   FTFQQDGASSH   
                                | |   | |   
PPS2_BACSU|P39846      2100   WfFsQsleShH   

12.----------------------------------------------------------------------------------
exampleA    83   0    1002      691-    736 VIL1_MOUSE|Q62468    VILLIN             
exampleB     7   0    1321      290-    300 VIL1_MOUSE|Q62468    VILLIN             
exampleC    11   0    1306      636-    646 VIL1_MOUSE|Q62468    VILLIN             
exampleD     9   0    1342      402-    416 VIL1_MOUSE|Q62468    VILLIN             
exampleE    64   0    1061      557-    593 VIL1_MOUSE|Q62468    VILLIN             

P< 0.016 for exampleD in support of exampleB
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
VIL1_MOUSE|Q62468    <:::::::::::::::::BBB:::::::::::::::::::::::::::DDDD
VIL1_MOUSE|Q62468                                                                                                                                                       EEEEEEEEEE           CCC            AAAAAAAAAAAA                                                                                                                                                     EEEEEEEEEE           CCC            AAAAAAAAAAAA


exampleB              <->B    (118,225):289 
HB1                     168   GGPKIMVWACF   
                              || || ||      
VIL1_MOUSE|Q62468       290   GGlKIfVWkgk   

exampleD             B<->D    (68,69):101       
Minos                   304   WPSNSPDLSPIENIW   
                              |      | | |  |   
VIL1_MOUSE|Q62468       402   WriedleLvPvEskW   

13.----------------------------------------------------------------------------------
exampleA    60   0    1006       99-    144 LEF4_NPVAC|P41477    LATE EXPRESSION FAC
exampleB    28   0    1217      261-    271 LEF4_NPVAC|P41477    LATE EXPRESSION FAC
exampleC     8   0    1336      365-    375 LEF4_NPVAC|P41477    LATE EXPRESSION FAC
exampleD    11   0    1325       54-     68 LEF4_NPVAC|P41477    LATE EXPRESSION FAC
exampleE    19   0    1109      328-    364 LEF4_NPVAC|P41477    LATE EXPRESSION FAC

No P-value computed for single block hits.

exampleC              <->C    (168,276):364 
TC1A_CAEBR              172   WVFQQDNDPKH   
                                |||  ||     
LEF4_NPVAC|P41477       365   lRFQQffDPpl   

14.----------------------------------------------------------------------------------
exampleA    80   0    1002       21-     66 GLND_MYCTU|Q10961    PROBABLE [PROTEIN-P
exampleB     5   0    1333      751-    761 GLND_MYCTU|Q10961    PROBABLE [PROTEIN-P
exampleC    16   0    1275      327-    337 GLND_MYCTU|Q10961    PROBABLE [PROTEIN-P
exampleD    35   0    1252      406-    420 GLND_MYCTU|Q10961    PROBABLE [PROTEIN-P
exampleE    22   0    1106      546-    582 GLND_MYCTU|Q10961    PROBABLE [PROTEIN-P

No P-value computed for single block hits.

exampleB              <->B    (118,225):750 
HB1                     168   GGPKIMVWACF   
                              |     |||     
GLND_MYCTU|Q10961       751   GaGagiVWAkv   

15.----------------------------------------------------------------------------------
exampleA    10   0    1030      241-    286 YDF7_SCHPO|Q10479    PUTATIVE GLUCOSYLTR
exampleB    35   0    1200      314-    324 YDF7_SCHPO|Q10479    PUTATIVE GLUCOSYLTR
exampleC    75   0    1092      401-    411 YDF7_SCHPO|Q10479    PUTATIVE GLUCOSYLTR
exampleD    10   0    1327      137-    151 YDF7_SCHPO|Q10479    PUTATIVE GLUCOSYLTR
exampleE    76   0    1055      453-    489 YDF7_SCHPO|Q10479    PUTATIVE GLUCOSYLTR

P<0.0033 for exampleB exampleC exampleE in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
YDF7_SCHPO|Q10479    AAAAAAAAAAAA:::::::BBB::::::::::::::::::::CCC:::::::::::EEEE>


exampleA              <->A    (52,155):240                                     
TC1A_CAEBR               53   KKPLVSLKNRKARVEWAKQHLSWGPREWANHIWSDESKFNMFGTDG   
                               |    |  |         |  | |  ||     |   |      |   
YDF7_SCHPO|Q10479       241   mKqiPqLLSRlfpfSRgLcHayWaPnFWAlysFvDrvAFaVlprfG   

exampleB             A<->B    (20,24):27    
Bari-1                  187   GGGTVMFWGCL   
                                    |  ||   
YDF7_SCHPO|Q10479       314   iPPaltFyiCL   

exampleC             B<->C    (39,40):76    
TC3A_CAEEL              226   FRFQQDNATIH   
                                |    | |    
YDF7_SCHPO|Q10479       401   llFtlneAPIk   

exampleE             C<->E    (50,56):41                              
TC1A_CAEBR              237   LEAAWKSIPMTVVQTLLESMPRRCKAVIDAKGYPTKY   
                              |      |   |     |  |        | |        
YDF7_SCHPO|Q10479       453   LfiyncfIhklVmgDkfEFlPlmLlstyAAwGifwsF   

16.----------------------------------------------------------------------------------
exampleA    68   0    1005      885-    930 SIN3_YEAST|P22579    PAIRED AMPHIPATHIC 
exampleB    24   0    1225      768-    778 SIN3_YEAST|P22579    PAIRED AMPHIPATHIC 
exampleC    14   0    1289      488-    498 SIN3_YEAST|P22579    PAIRED AMPHIPATHIC 
exampleD    12   0    1323      828-    842 SIN3_YEAST|P22579    PAIRED AMPHIPATHIC 
exampleE    53   0    1074     1135-   1171 SIN3_YEAST|P22579    PAIRED AMPHIPATHIC 

P< 0.022 for exampleB in support of exampleD
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
SIN3_YEAST|P22579    <::::::::::::::::::::::BBB:::::::::::::DDDD
SIN3_YEAST|P22579                                                                                                                                                                                                                                               AAAAAAAAAAAA                                                      EEEEEEEEEE                                                                                                                                                                                                                                             AAAAAAAAAAAA                                                      EEEEEEEEEE


exampleB              <->B    (118,225):767 
Bari-1                  187   GGGTVMFWGCL   
                               |   | |  |   
SIN3_YEAST|P22579       768   sGrddMcWevL   

exampleD             B<->D    (68,69):49        
HB1                     247   WQAPPSHLNPIENLY   
                               |      | |||     
SIN3_YEAST|P22579       828   iQcletiVNkIENMt   

17.----------------------------------------------------------------------------------
exampleA    44   0    1011      237-    282 EUTE_ECOLI|P77445    ETHANOLAMINE UTILIZ
exampleB    54   0    1143      215-    225 EUTE_ECOLI|P77445    ETHANOLAMINE UTILIZ
exampleC    61   0    1111        0-     10 EUTE_ECOLI|P77445    ETHANOLAMINE UTILIZ
exampleD    13   0    1321      133-    147 EUTE_ECOLI|P77445    ETHANOLAMINE UTILIZ
exampleE    58   0    1069      262-    298 EUTE_ECOLI|P77445    ETHANOLAMINE UTILIZ

No P-value computed for single block hits.

exampleD              <->D    (197,305):132     
Uhu                     229   XPAQSPDVNVIXNLW   
                               |   |   || |     
EUTE_ECOLI|P77445       133   tPStnPaatVInNai   

18.----------------------------------------------------------------------------------
exampleA    79   0    1002      237-    282 EUTE_SALTY|P41793    ETHANOLAMINE UTILIZ
exampleB    73   0    1111      215-    225 EUTE_SALTY|P41793    ETHANOLAMINE UTILIZ
exampleC    62   0    1111        0-     10 EUTE_SALTY|P41793    ETHANOLAMINE UTILIZ
exampleD    14   0    1321      133-    147 EUTE_SALTY|P41793    ETHANOLAMINE UTILIZ
exampleE    59   0    1069      262-    298 EUTE_SALTY|P41793    ETHANOLAMINE UTILIZ

No P-value computed for single block hits.

exampleD              <->D    (197,305):132     
Uhu                     229   XPAQSPDVNVIXNLW   
                               |   |   || |     
EUTE_SALTY|P41793       133   tPStnPaatVInNai   

19.----------------------------------------------------------------------------------
exampleA    71   0    1004      128-    173 PH81_YEAST|P17442    PHOSPHATE SYSTEM PO
exampleB    12   0    1259     1159-   1169 PH81_YEAST|P17442    PHOSPHATE SYSTEM PO
exampleC    24   0    1251      725-    735 PH81_YEAST|P17442    PHOSPHATE SYSTEM PO
exampleD    15   0    1319       85-     99 PH81_YEAST|P17442    PHOSPHATE SYSTEM PO
exampleE    31   0    1097      961-    997 PH81_YEAST|P17442    PHOSPHATE SYSTEM PO

No P-value computed for single block hits.

exampleB              <->B    (118,225):1158
HB1                     168   GGPKIMVWACF   
                              ||      ||    
PH81_YEAST|P17442      1159   GGySgiyyACe   

20.----------------------------------------------------------------------------------
exampleA    43   0    1011       92-    137 AST5_DROME|P10083    ACHAETE-SCUTE COMPL
exampleB    74   0    1106       22-     32 AST5_DROME|P10083    ACHAETE-SCUTE COMPL
exampleC     9   0    1315      112-    122 AST5_DROME|P10083    ACHAETE-SCUTE COMPL
exampleD    83   0    1117      152-    166 AST5_DROME|P10083    ACHAETE-SCUTE COMPL
exampleE    56   0    1071       67-    103 AST5_DROME|P10083    ACHAETE-SCUTE COMPL

P< 0.058 for exampleB exampleD in support of exampleC
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
AST5_DROME|P10083     
AST5_DROME|P10083                      EEEEEEEEEEAAAAAAAA                    EEEEEEEEEEAAAAAAAA


exampleB              <->B    (118,225):21  
TC1A_CAEBR              122   GGGSVMVWGCF   
                               | ||         
AST5_DROME|P10083        22   nGPSVirrnAr   

exampleC             B<->C    (39,40):79    
TC3A_CAEEL              226   FRFQQDNATIH   
                                |||     |   
AST5_DROME|P10083       112   lhFQQqqqhqH   

exampleD             C<->D    (18,18):29        
Minos                   304   WPSNSPDLSPIENIW   
                                |  |   |  |     
AST5_DROME|P10083       152   atStiPgatPpnNfh   

21.----------------------------------------------------------------------------------
exampleA    18   0    1021     1470-   1515 SPCB_DROME|Q00963    SPECTRIN BETA CHAIN
exampleB    68   0    1123      952-    962 SPCB_DROME|Q00963    SPECTRIN BETA CHAIN
exampleC    10   0    1310      638-    648 SPCB_DROME|Q00963    SPECTRIN BETA CHAIN
exampleD    26   0    1275     2007-   2021 SPCB_DROME|Q00963    SPECTRIN BETA CHAIN
exampleE     8   0    1142     1864-   1900 SPCB_DROME|Q00963    SPECTRIN BETA CHAIN

No P-value computed for single block hits.

exampleE              <->E    (229,343):1863                          
Bari-1                  303   IAEIWSKLTLEFAQTLVRSIPKRLQAVIDAKGGVTKY   
                              | |   ||    |      |  | | |  |          
SPCB_DROME|Q00963      1864   IQEEsAKLqDayAgDkakeItNReQEVLhAwdNlqam   

22.----------------------------------------------------------------------------------
exampleA    42   0    1011     1130-   1175 YCF2_MARPO|P09975    HYPOTHETICAL 259 KD
exampleB    47   0    1185     1937-   1947 YCF2_MARPO|P09975    HYPOTHETICAL 259 KD
exampleC    27   0    1227      460-    470 YCF2_MARPO|P09975    HYPOTHETICAL 259 KD
exampleD    16   0    1310      540-    554 YCF2_MARPO|P09975    HYPOTHETICAL 259 KD
exampleE    18   0    1111      459-    495 YCF2_MARPO|P09975    HYPOTHETICAL 259 KD

No P-value computed for single block hits.

exampleD              <->D    (197,305):539     
Uhu                     229   XPAQSPDVNVIXNLW   
                                  | |     |||   
YCF2_MARPO|P09975       540   nkikSSDnfrfiNLW   

23.----------------------------------------------------------------------------------
exampleA    36   0    1012      191-    236 NRAM_INBOR|P16201    NEURAMINIDASE (EC 3
exampleB    76   0    1106       45-     55 NRAM_INBOR|P16201    NEURAMINIDASE (EC 3
exampleC    68   0    1102      379-    389 NRAM_INBOR|P16201    NEURAMINIDASE (EC 3
exampleD    17   0    1306       47-     61 NRAM_INBOR|P16201    NEURAMINIDASE (EC 3
exampleE    70   0    1058      354-    390 NRAM_INBOR|P16201    NEURAMINIDASE (EC 3

No P-value computed for single block hits.

exampleD              <->D    (197,305):46      
Bari-1                  267   WPPQSPDLNIIENVW   
                               |  | |   | ||    
NRAM_INBOR|P16201        47   aPtmSlDcanIsNVq   

24.----------------------------------------------------------------------------------
exampleA    50   0    1008       82-    127 GYRB_ACICA|Q43947    DNA GYRASE SUBUNIT 
exampleB    32   0    1200       56-     66 GYRB_ACICA|Q43947    DNA GYRASE SUBUNIT 
exampleC    43   0    1175       35-     45 GYRB_ACICA|Q43947    DNA GYRASE SUBUNIT 
exampleD    18   0    1304       63-     77 GYRB_ACICA|Q43947    DNA GYRASE SUBUNIT 
exampleE    25   0    1100      139-    175 GYRB_ACICA|Q43947    DNA GYRASE SUBUNIT 

P< 0.083 for exampleC in support of exampleD
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
GYRB_ACICA|Q43947                          
GYRB_ACICA|Q43947                                        BBB    AAAAAAAAAAAA   EEEEEEEEEE                                      BBB    AAAAAAAAAAAA   EEEEEEEEEE


exampleC              <->C    (168,276):34  
TC1A_CAEBR              172   WVFQQDNDPKH   
                                  |  ||     
GYRB_ACICA|Q43947        35   eqeYQhGDPqy   

exampleD             C<->D    (18,18):17        
Minos                   304   WPSNSPDLSPIENIW   
                              |||       | |     
GYRB_ACICA|Q43947        63   WPSeltftqtIfNVe   

25.----------------------------------------------------------------------------------
exampleA     6   0    1044      642-    687 YP22_YEAST|Q08968    HYPOTHETICAL 78.3 K
exampleB    53   0    1151      318-    328 YP22_YEAST|Q08968    HYPOTHETICAL 78.3 K
exampleC    13   0    1301       89-     99 YP22_YEAST|Q08968    HYPOTHETICAL 78.3 K
exampleD    31   0    1263      631-    645 YP22_YEAST|Q08968    HYPOTHETICAL 78.3 K
exampleE    10   0    1134      404-    440 YP22_YEAST|Q08968    HYPOTHETICAL 78.3 K

No P-value computed for single block hits.

exampleA              <->A    (52,155):641                                     
TC1A_CAEBR               53   KKPLVSLKNRKARVEWAKQHLSWGPREWANHIWSDESKFNMFGTDG   
                              ||      |   |  |           ||     |  || |        
YP22_YEAST|Q08968       642   KKlyLmsvNpydRtKWdvTlrpeleTKWAdlshqDdAKFMMQaScS   

26.----------------------------------------------------------------------------------
exampleA    11   0    1029     2062-   2107 ACVS_EMENI|P27742    DELTA-(L-ALPHA-AMIN
exampleB     8   0    1294      148-    158 ACVS_EMENI|P27742    DELTA-(L-ALPHA-AMIN
exampleC    19   0    1258     2352-   2362 ACVS_EMENI|P27742    DELTA-(L-ALPHA-AMIN
exampleD    29   0    1263     2769-   2783 ACVS_EMENI|P27742    DELTA-(L-ALPHA-AMIN
exampleE     6   0    1150     2965-   3001 ACVS_EMENI|P27742    DELTA-(L-ALPHA-AMIN

No P-value computed for single block hits.

exampleE              <->E    (229,343):2964                          
Bari-1                  303   IAEIWSKLTLEFAQTLVRSIPKRLQAVIDAKGGVTKY   
                               |   |||               |   |  |  | |    
ACVS_EMENI|P27742      2965   LAhMkSKLPaymVpKyLcrlEgGLpvtIngKlDVrKl   

27.----------------------------------------------------------------------------------
exampleA    86   0    1001     1274-   1319 PTP1_DROME|P35992    PROTEIN-TYROSINE PH
exampleB     9   0    1264     1363-   1373 PTP1_DROME|P35992    PROTEIN-TYROSINE PH
exampleC    18   0    1261     1482-   1492 PTP1_DROME|P35992    PROTEIN-TYROSINE PH
exampleD    20   0    1290      707-    721 PTP1_DROME|P35992    PROTEIN-TYROSINE PH
exampleE    48   0    1078      749-    785 PTP1_DROME|P35992    PROTEIN-TYROSINE PH

P< 0.029 for exampleA in support of exampleB
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
PTP1_DROME|P35992    AAAAAAA:::::::::::BBB
PTP1_DROME|P35992                                                                                                                                                                                                                                                                                                                                                                                                              CCC                                                                                                                                                                                                                                                                                                                                                                                                            CCC


exampleA              <->A    (52,155):1273                                    
Bari-1                  120   KTIEITPTNKTKRLRFALEYVKKPLDFWFNILWTDESAFQYQGSYS   
                                 |           ||      |     |||  | | |  |       
PTP1_DROME|P35992      1274   EfeELkhvgRDqpcTFAdlpcNrPknrftNILpyDhSrFkLQpvDd   

exampleB             A<->B    (20,24):43    
TC1A_CAEBR              122   GGGSVMVWGCF   
                                  ||   ||   
PTP1_DROME|P35992      1363   srAiVMltrCF   

28.----------------------------------------------------------------------------------
exampleA    22   0    1017      461-    506 YPB4_CAEEL|Q11107    HYPOTHETICAL ZINC F
exampleB    20   0    1230     1121-   1131 YPB4_CAEEL|Q11107    HYPOTHETICAL ZINC F
exampleC    15   0    1289      515-    525 YPB4_CAEEL|Q11107    HYPOTHETICAL ZINC F
exampleD    32   0    1263     1972-   1986 YPB4_CAEEL|Q11107    HYPOTHETICAL ZINC F
exampleE    36   0    1092     1080-   1116 YPB4_CAEEL|Q11107    HYPOTHETICAL ZINC F

No P-value computed for single block hits.

exampleC              <->C    (168,276):514 
Minos                   275   FTFQQDGASSH   
                                  ||  ||    
YPB4_CAEEL|Q11107       515   slLeQDNqSSs   

29.----------------------------------------------------------------------------------
exampleA    16   0    1026      402-    447 NIFK_AZOVI|P07329    NITROGENASE MOLYBDE
exampleB    42   0    1193      362-    372 NIFK_AZOVI|P07329    NITROGENASE MOLYBDE
exampleC    49   0    1159      381-    391 NIFK_AZOVI|P07329    NITROGENASE MOLYBDE
exampleD    21   0    1285      308-    322 NIFK_AZOVI|P07329    NITROGENASE MOLYBDE
exampleE    12   0    1125      378-    414 NIFK_AZOVI|P07329    NITROGENASE MOLYBDE

No P-value computed for single block hits.

exampleE              <->E    (229,343):377                           
TC1A_CAEBR              237   LEAAWKSIPMTVVQTLLESMPRRCKAVIDAKGYPTKY   
                              |           |  |      | |   ||      |   
NIFK_AZOVI|P07329       378   LvkflleLgcEPVHiLchngNKRwKkavDAilaAspY   

30.----------------------------------------------------------------------------------
exampleA    24   0    1016      162-    207 MAOM_SOLTU|P37221    MALATE OXIDOREDUCTA
exampleB    57   0    1141      315-    325 MAOM_SOLTU|P37221    MALATE OXIDOREDUCTA
exampleC    81   0    1081      444-    454 MAOM_SOLTU|P37221    MALATE OXIDOREDUCTA
exampleD    22   0    1281      459-    473 MAOM_SOLTU|P37221    MALATE OXIDOREDUCTA
exampleE    43   0    1085       74-    110 MAOM_SOLTU|P37221    MALATE OXIDOREDUCTA

P< 0.054 for exampleC in support of exampleD
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
MAOM_SOLTU|P37221    <::::::::::::::::::::::::::::::::::CCC:DDDD


exampleC              <->C    (168,276):443 
TC3A_CAEEL              226   FRFQQDNATIH   
                              |      |  |   
MAOM_SOLTU|P37221       444   FskevleAlKH   

exampleD             C<->D    (18,18):4         
TC3A_CAEEL              255   WPARSPDLNPIENLW   
                               ||  |  ||  |     
MAOM_SOLTU|P37221       459   rPAifPmsNPtrNae   

31.----------------------------------------------------------------------------------
exampleA    31   0    1013       82-    127 GYRB_ACIJO|Q44081    DNA GYRASE SUBUNIT 
exampleB    31   0    1207       56-     66 GYRB_ACIJO|Q44081    DNA GYRASE SUBUNIT 
exampleC    85   0    1059       72-     82 GYRB_ACIJO|Q44081    DNA GYRASE SUBUNIT 
exampleD    23   0    1279       63-     77 GYRB_ACIJO|Q44081    DNA GYRASE SUBUNIT 
exampleE    26   0    1100      139-    175 GYRB_ACIJO|Q44081    DNA GYRASE SUBUNIT 

No P-value computed for single block hits.

exampleD              <->D    (197,305):62      
Minos                   304   WPSNSPDLSPIENIW   
                              |||       | |     
GYRB_ACIJO|Q44081        63   WPSaetfsqtIfNVd   

32.----------------------------------------------------------------------------------
exampleA    52   0    1008       82-    127 GYRB_ACIS1|Q44272    DNA GYRASE SUBUNIT 
exampleB    49   0    1178        9-     19 GYRB_ACIS1|Q44272    DNA GYRASE SUBUNIT 
exampleC    86   0    1059       72-     82 GYRB_ACIS1|Q44272    DNA GYRASE SUBUNIT 
exampleD    24   0    1279       63-     77 GYRB_ACIS1|Q44272    DNA GYRASE SUBUNIT 
exampleE    27   0    1100      139-    175 GYRB_ACIS1|Q44272    DNA GYRASE SUBUNIT 

P<  0.16 for exampleB in support of exampleD
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
GYRB_ACIS1|Q44272                           
GYRB_ACIS1|Q44272                                             CCCAAAAAAAAAAAA   EEEEEEEEEE                                           CCCAAAAAAAAAAAA   EEEEEEEEEE


exampleB              <->B    (118,225):8   
TC3A_CAEEL              176   GGGTVMVWGAF   
                               |  | |  |    
GYRB_ACIS1|Q44272         9   HGvgVsVvnAL   

exampleD             B<->D    (68,69):43        
Minos                   304   WPSNSPDLSPIENIW   
                              |||       | |     
GYRB_ACIS1|Q44272        63   WPSaetfsqtIfNVd   

33.----------------------------------------------------------------------------------
exampleA    85   0    1001       82-    127 GYRB_ACIS8|Q44275    DNA GYRASE SUBUNIT 
exampleB    41   0    1193       56-     66 GYRB_ACIS8|Q44275    DNA GYRASE SUBUNIT 
exampleC    80   0    1081      143-    153 GYRB_ACIS8|Q44275    DNA GYRASE SUBUNIT 
exampleD    25   0    1279       63-     77 GYRB_ACIS8|Q44275    DNA GYRASE SUBUNIT 
exampleE    32   0    1097      139-    175 GYRB_ACIS8|Q44275    DNA GYRASE SUBUNIT 

No P-value computed for single block hits.

exampleD              <->D    (197,305):62      
Minos                   304   WPSNSPDLSPIENIW   
                              |||       | |     
GYRB_ACIS8|Q44275        63   WPSaetfsqtIfNVd   

34.----------------------------------------------------------------------------------
exampleA    19   0    1021      145-    190 MAON_SOLTU|P37225    MALATE OXIDOREDUCTA
exampleB    70   0    1116      298-    308 MAON_SOLTU|P37225    MALATE OXIDOREDUCTA
exampleC    64   0    1102       66-     76 MAON_SOLTU|P37225    MALATE OXIDOREDUCTA
exampleD    27   0    1267      478-    492 MAON_SOLTU|P37225    MALATE OXIDOREDUCTA
exampleE    62   0    1066      399-    435 MAON_SOLTU|P37225    MALATE OXIDOREDUCTA

P<  0.29 for exampleE in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
MAON_SOLTU|P37225    AAAAAAAAAAAA::::::::::::::::::::::::::::::::::::::::::::::::>
MAON_SOLTU|P37225                                                                                  BBB                                             DDDD                                                                                BBB                                             DDDD


exampleA              <->A    (52,155):144                                     
HB1                      98   KVPLPSPRHIKARLSLAKTYLNWPVSKWRNILWTDGSKIMLFGGTG   
                                |       |          |||      |  |||| |   |  |   
MAON_SOLTU|P37225       145   rrPrgmyfSAKdKgEmmsmifNWPsTQvDmIVlTDGSrIlglGdlG   

exampleE             A<->E    (131,142):208                           
TC1A_CAEBR              237   LEAAWKSIPMTVVQTLLESMPRRCKAVIDAKGYPTKY   
                              |    |     |   |          |  |          
MAON_SOLTU|P37225       399   LAEVvKKvkPhVLlgLsgvggifheEVLRAmkesdsv   

35.----------------------------------------------------------------------------------
exampleA    67   0    1005      799-    844 ITA2_BOVIN|P53710    PLATELET MEMBRANE G
exampleB    37   0    1198      262-    272 ITA2_BOVIN|P53710    PLATELET MEMBRANE G
exampleC    41   0    1178       39-     49 ITA2_BOVIN|P53710    PLATELET MEMBRANE G
exampleD    28   0    1265      982-    996 ITA2_BOVIN|P53710    PLATELET MEMBRANE G
exampleE    16   0    1113      643-    679 ITA2_BOVIN|P53710    PLATELET MEMBRANE G

No P-value computed for single block hits.

exampleE              <->E    (229,343):642                           
TC1A_CAEBR              237   LEAAWKSIPMTVVQTLLESMPRRCKAVIDAKGYPTKY   
                                    |        |        |    ||  ||     
ITA2_BOVIN|P53710       643   dvsVdASfTPKkItlLnknaEikLKlcfsAKfrPTNq   

36.----------------------------------------------------------------------------------
exampleA    88   0    1001      101-    146 YO96_CAEEL|P41846    HYPOTHETICAL 93.9 K
exampleB    25   0    1225      587-    597 YO96_CAEEL|P41846    HYPOTHETICAL 93.9 K
exampleC    17   0    1265      121-    131 YO96_CAEEL|P41846    HYPOTHETICAL 93.9 K
exampleD    36   0    1246      413-    427 YO96_CAEEL|P41846    HYPOTHETICAL 93.9 K
exampleE    60   0    1069      730-    766 YO96_CAEEL|P41846    HYPOTHETICAL 93.9 K

No P-value computed for single block hits.

exampleC              <->C    (168,276):120 
TC1A_CAEBR              172   WVFQQDNDPKH   
                                 |    |||   
YO96_CAEEL|P41846       121   vkLQrsqtPKH   

37.----------------------------------------------------------------------------------
exampleA     9   0    1030       38-     83 YFEH_ECOLI|P39836    HYPOTHETICAL 36.4 K
exampleB    45   0    1190      300-    310 YFEH_ECOLI|P39836    HYPOTHETICAL 36.4 K
exampleC    58   0    1128      195-    205 YFEH_ECOLI|P39836    HYPOTHETICAL 36.4 K
exampleD    30   0    1263       24-     38 YFEH_ECOLI|P39836    HYPOTHETICAL 36.4 K
exampleE    54   0    1073      217-    253 YFEH_ECOLI|P39836    HYPOTHETICAL 36.4 K

P<  0.45 for exampleE in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
YFEH_ECOLI|P39836    AAAAAAAAAAAA:::::::::::::::::::::::::::::::::::EEEEEEEEEE
YFEH_ECOLI|P39836                                                       CCC                         BBB                                                     CCC                         BBB


exampleA              <->A    (52,155):37                                      
TC1A_CAEEL               53   KKPFISKKNRMARVAWAKAHLRWGRQEWAKHIWSDESKFNLFGSDG   
                                  |     |            |   |  | |   | | ||   |   
YFEH_ECOLI|P39836        38   tTaaIaLLffMHgaKLsREAiiaGGghWRlHLWvmcStFvLFpilG   

exampleE             A<->E    (131,142):133                           
Bari-1                  303   IAEIWSKLTLEFAQTLVRSIPKRLQAVIDAKGGVTKY   
                                 || |         |      |  ||            
YFEH_ECOLI|P39836       217   VngIWhKvgwgsLlfIVvvscvlLaiVIvvNvFmArr   

38.----------------------------------------------------------------------------------
exampleA    45   0    1011       35-     80 GLO2_HUMAN|Q16775    HYDROXYACYLGLUTATHI
exampleB    10   0    1259      132-    142 GLO2_HUMAN|Q16775    HYDROXYACYLGLUTATHI
exampleC    84   0    1066      225-    235 GLO2_HUMAN|Q16775    HYDROXYACYLGLUTATHI
exampleD    80   0    1129      123-    137 GLO2_HUMAN|Q16775    HYDROXYACYLGLUTATHI
exampleE    78   0    1049       82-    118 GLO2_HUMAN|Q16775    HYDROXYACYLGLUTATHI

No P-value computed for single block hits.

exampleB              <->B    (118,225):131 
TC1A_CAEBR              122   GGGSVMVWGCF   
                               |    | ||    
GLO2_HUMAN|Q16775       132   tGdTlfVaGCg   

39.----------------------------------------------------------------------------------
exampleA    13   0    1029      296-    341 MSH5_YEAST|Q12175    MUTS PROTEIN HOMOLO
exampleB    11   0    1259      614-    624 MSH5_YEAST|Q12175    MUTS PROTEIN HOMOLO
exampleC    56   0    1130      137-    147 MSH5_YEAST|Q12175    MUTS PROTEIN HOMOLO
exampleD    69   0    1185      491-    505 MSH5_YEAST|Q12175    MUTS PROTEIN HOMOLO
exampleE    40   0    1086      530-    566 MSH5_YEAST|Q12175    MUTS PROTEIN HOMOLO

No P-value computed for single block hits.

exampleB              <->B    (118,225):613 
Minos                   224   FPASTMVWGCM   
                               | |||  |     
MSH5_YEAST|Q12175       614   iPnSTMidGgL   

40.----------------------------------------------------------------------------------
exampleA    78   0    1003      331-    376 YM8I_YEAST|Q03529    HYPOTHETICAL 44.9 K
exampleB    17   0    1247      229-    239 YM8I_YEAST|Q03529    HYPOTHETICAL 44.9 K
exampleC    20   0    1258      167-    177 YM8I_YEAST|Q03529    HYPOTHETICAL 44.9 K
exampleD    88   0    1081      280-    294 YM8I_YEAST|Q03529    HYPOTHETICAL 44.9 K
exampleE    55   0    1073      201-    237 YM8I_YEAST|Q03529    HYPOTHETICAL 44.9 K

P<  0.33 for exampleD in support of exampleB
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
YM8I_YEAST|Q03529    <:::::::::::::::::BBB:::::::::::DDDD
YM8I_YEAST|Q03529                                                                                           AAAAAAAAAAAA                                                                                         AAAAAAAAAAAA


exampleB              <->B    (118,225):228 
Uhu                     150   HGGSVMVWACI   
                                  | ||  |   
YM8I_YEAST|Q03529       229   FcvgVfVWtlI   

exampleD             B<->D    (68,69):40        
HB1                     247   WQAPPSHLNPIENLY   
                                  |  |  |       
YM8I_YEAST|Q03529       280   rlvmPPtLfVIlcap   

41.----------------------------------------------------------------------------------
exampleA    47   0    1010      192-    237 YNC4_YEAST|P53970    HYPOTHETICAL 27.7 K
exampleB    13   0    1257       87-     97 YNC4_YEAST|P53970    HYPOTHETICAL 27.7 K
exampleC    89   0    1000       35-     45 YNC4_YEAST|P53970    HYPOTHETICAL 27.7 K
exampleD    66   0    1190      144-    158 YNC4_YEAST|P53970    HYPOTHETICAL 27.7 K
exampleE    79   0    1049      113-    149 YNC4_YEAST|P53970    HYPOTHETICAL 27.7 K

P<  0.39 for exampleD in support of exampleB
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
YNC4_YEAST|P53970    <:::::::::::::::::BBB::::::::::::DDDD
YNC4_YEAST|P53970                                 EEEEEEEEEE           AAAAAAAAAAAA                               EEEEEEEEEE           AAAAAAAAAAAA


exampleB              <->B    (118,225):86  
TC1A_CAEBR              122   GGGSVMVWGCF   
                              | |   |  |    
YNC4_YEAST|P53970        87   GsGTglVglCv   

exampleD             B<->D    (68,69):46        
Minos                   304   WPSNSPDLSPIENIW   
                                  | | || |      
YNC4_YEAST|P53970       144   gePlSaDfSPqEgam   

42.----------------------------------------------------------------------------------
exampleA    82   0    1002      196-    241 MA2X_HUMAN|P49641    ALPHA-MANNOSIDASE I
exampleB    14   0    1254      877-    887 MA2X_HUMAN|P49641    ALPHA-MANNOSIDASE I
exampleC    35   0    1199      332-    342 MA2X_HUMAN|P49641    ALPHA-MANNOSIDASE I
exampleD    63   0    1194      993-   1007 MA2X_HUMAN|P49641    ALPHA-MANNOSIDASE I
exampleE    11   0    1127      180-    216 MA2X_HUMAN|P49641    ALPHA-MANNOSIDASE I

No P-value computed for single block hits.

exampleE              <->E    (229,343):179                           
Uhu                     261   LLDEWSKISPETTRKLVSSMNNRLMEDIKAKGYHTKY   
                                    |   | |     ||   | ||             
MA2X_HUMAN|P49641       180   wikTfDKyytEQTQhILnSMvskLQEDpRrrflwAev   

43.----------------------------------------------------------------------------------
exampleA    69   0    1005       19-     64 THIS_ECOLI|O32583    THIS PROTEIN       
exampleB    87   0    1047       53-     63 THIS_ECOLI|O32583    THIS PROTEIN       
exampleC    21   0    1254       48-     58 THIS_ECOLI|O32583    THIS PROTEIN       
exampleD    89   0    1000       37-     51 THIS_ECOLI|O32583    THIS PROTEIN       
exampleE    89   0    1000        6-     42 THIS_ECOLI|O32583    THIS PROTEIN       

No P-value computed for single block hits.

exampleC              <->C    (168,276):47  
HB1                     218   WTFQQDNDQKR   
                                  || ||     
THIS_ECOLI|O32583        48   qhivQDGDQIl   

44.----------------------------------------------------------------------------------
exampleA    56   0    1007       99-    144 YOUG_BACLI|Q45292    HYPOTHETICAL 17.3 K
exampleB    88   0    1032       28-     38 YOUG_BACLI|Q45292    HYPOTHETICAL 17.3 K
exampleC    34   0    1213      125-    135 YOUG_BACLI|Q45292    HYPOTHETICAL 17.3 K
exampleD    34   0    1254      105-    119 YOUG_BACLI|Q45292    HYPOTHETICAL 17.3 K
exampleE    77   0    1051       56-     92 YOUG_BACLI|Q45292    HYPOTHETICAL 17.3 K

No P-value computed for single block hits.

exampleC              <->C    (168,276):124 
TC3A_CAEEL              226   FRFQQDNATIH   
                              |||       |   
YOUG_BACLI|Q45292       125   FRFghieiSeH   

45.----------------------------------------------------------------------------------
exampleA    48   0    1009      523-    568 KINN_HUMAN|Q12840    NEURONAL KINESIN HE
exampleB    30   0    1212      295-    305 KINN_HUMAN|Q12840    NEURONAL KINESIN HE
exampleC    22   0    1251      891-    901 KINN_HUMAN|Q12840    NEURONAL KINESIN HE
exampleD    70   0    1181      256-    270 KINN_HUMAN|Q12840    NEURONAL KINESIN HE
exampleE    49   0    1078      582-    618 KINN_HUMAN|Q12840    NEURONAL KINESIN HE

No P-value computed for single block hits.

exampleC              <->C    (168,276):890 
TC3A_CAEEL              226   FRFQQDNATIH   
                               | ||    |    
KINN_HUMAN|Q12840       891   rRyQQevDrIk   

46.----------------------------------------------------------------------------------
exampleA    53   0    1008      523-    568 KINN_MOUSE|P28738    NEURONAL KINESIN HE
exampleB    52   0    1156      295-    305 KINN_MOUSE|P28738    NEURONAL KINESIN HE
exampleC    23   0    1251      891-    901 KINN_MOUSE|P28738    NEURONAL KINESIN HE
exampleD    71   0    1181      256-    270 KINN_MOUSE|P28738    NEURONAL KINESIN HE
exampleE    50   0    1078      582-    618 KINN_MOUSE|P28738    NEURONAL KINESIN HE

No P-value computed for single block hits.

exampleC              <->C    (168,276):890 
TC3A_CAEEL              226   FRFQQDNATIH   
                               | ||    |    
KINN_MOUSE|P28738       891   rRyQQevDrIk   

47.----------------------------------------------------------------------------------
exampleA    23   0    1016      139-    184 MAOC_LYCES|P37222    MALATE OXIDOREDUCTA
exampleB    16   0    1247      292-    302 MAOC_LYCES|P37222    MALATE OXIDOREDUCTA
exampleC    77   0    1085      273-    283 MAOC_LYCES|P37222    MALATE OXIDOREDUCTA
exampleD    81   0    1123      514-    528 MAOC_LYCES|P37222    MALATE OXIDOREDUCTA
exampleE    45   0    1081      386-    422 MAOC_LYCES|P37222    MALATE OXIDOREDUCTA

P<  0.17 for exampleE in support of exampleB
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
MAOC_LYCES|P37222    <:::::::::::::::::BBB::::::::::::::::::::::EEEEEEEEEE
MAOC_LYCES|P37222                                                                                                                                            DDDD                                                                                                                                          DDDD


exampleB              <->B    (118,225):291 
Minos                   224   FPASTMVWGCM   
                                ||    | |   
MAOC_LYCES|P37222       292   GtASVvlaGlM   

exampleE             B<->E    (100,107):83                            
TC1A_CAEBR              237   LEAAWKSIPMTVVQTLLESMPRRCKAVIDAKGYPTKY   
                              |  | |||  ||            | |  |          
MAOC_LYCES|P37222       386   LvNAvKSIkPTVLigssgagrtftKEVvQAmatfnek   

48.----------------------------------------------------------------------------------
exampleA    17   0    1023      461-    506 OE66_NPVAC|Q00704    OCCLUSION-DERIVED V
exampleB    18   0    1242      469-    479 OE66_NPVAC|Q00704    OCCLUSION-DERIVED V
exampleC    28   0    1225       66-     76 OE66_NPVAC|Q00704    OCCLUSION-DERIVED V
exampleD    47   0    1215      145-    159 OE66_NPVAC|Q00704    OCCLUSION-DERIVED V
exampleE    75   0    1055      394-    430 OE66_NPVAC|Q00704    OCCLUSION-DERIVED V

No P-value computed for single block hits.

exampleA              <->A    (52,155):460                                     
TC3A_CAEEL              110   KLRPAPLLSADHKLKRLEFAKNNMGTNWSKVVFSDEKKFNLDGPDG   
                                  |    |   |    ||  |     |   | |   | |    |   
OE66_NPVAC|Q00704       461   qTaiAkTdtAGAiLvyAKFAemNnLQFkSctLFyDhgmFQLyyniG   

49.----------------------------------------------------------------------------------
exampleA    81   0    1002       64-    109 HBB1_TRICR|P10785    HEMOGLOBIN BETA-1 C
exampleB    19   0    1235       62-     72 HBB1_TRICR|P10785    HEMOGLOBIN BETA-1 C
exampleC    46   0    1166       81-     91 HBB1_TRICR|P10785    HEMOGLOBIN BETA-1 C
exampleD    74   0    1156       80-     94 HBB1_TRICR|P10785    HEMOGLOBIN BETA-1 C
exampleE    80   0    1047       51-     87 HBB1_TRICR|P10785    HEMOGLOBIN BETA-1 C

P<  0.26 for exampleC in support of exampleB
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
HBB1_TRICR|P10785      
HBB1_TRICR|P10785                      AAAAAAAAAAAA                    AAAAAAAAAAAA
HBB1_TRICR|P10785                          DDDD                        DDDD


exampleB              <->B    (118,225):61  
TC3A_CAEEL              176   GGGTVMVWGAF   
                               |  ||   |    
HBB1_TRICR|P10785        62   HGAKVMhsiAe   

exampleC             B<->C    (39,40):8     
TC3A_CAEEL              226   FRFQQDNATIH   
                                   |  |||   
HBB1_TRICR|P10785        81   kayYaDlsTIH   

50.----------------------------------------------------------------------------------
exampleA    46   0    1010      596-    641 TRFE_RABIT|P19134    SEROTRANSFERRIN PRE
exampleB    59   0    1133      275-    285 TRFE_RABIT|P19134    SEROTRANSFERRIN PRE
exampleC    53   0    1140      458-    468 TRFE_RABIT|P19134    SEROTRANSFERRIN PRE
exampleD    37   0    1233      362-    376 TRFE_RABIT|P19134    SEROTRANSFERRIN PRE
exampleE    15   0    1116      627-    663 TRFE_RABIT|P19134    SEROTRANSFERRIN PRE

No P-value computed for single block hits.

exampleE              <->E    (229,343):626                           
Bari-1                  303   IAEIWSKLTLEFAQTLVRSIPKRLQAVIDAKGGVTKY   
                               |   ||       |             |  |  |     
TRFE_RABIT|P19134       627   VADcsSKfcMfHsKTkdllfrDdtKClvDlrGknTye   

51.----------------------------------------------------------------------------------
exampleA    62   0    1005       58-    103 YDIL_ECOLI|P76196    HYPOTHETICAL 15.0 K
exampleB    84   0    1059      101-    111 YDIL_ECOLI|P76196    HYPOTHETICAL 15.0 K
exampleC    44   0    1175      108-    118 YDIL_ECOLI|P76196    HYPOTHETICAL 15.0 K
exampleD    38   0    1233       96-    110 YDIL_ECOLI|P76196    HYPOTHETICAL 15.0 K
exampleE    42   0    1086       33-     69 YDIL_ECOLI|P76196    HYPOTHETICAL 15.0 K

No P-value computed for single block hits.

exampleD              <->D    (197,305):95      
Uhu                     229   XPAQSPDVNVIXNLW   
                                   || | |       
YDIL_ECOLI|P76196        96   fQrvyPDgNfIdwki   

52.----------------------------------------------------------------------------------
exampleA    57   0    1006       39-     84 YENR_YEREN|P54295    YENR REGULATORY PRO
exampleB    72   0    1114      184-    194 YENR_YEREN|P54295    YENR REGULATORY PRO
exampleC    25   0    1230      159-    169 YENR_YEREN|P54295    YENR REGULATORY PRO
exampleD    84   0    1117       37-     51 YENR_YEREN|P54295    YENR REGULATORY PRO
exampleE    86   0    1038      135-    171 YENR_YEREN|P54295    YENR REGULATORY PRO

P<  0.37 for exampleA in support of exampleC
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
YENR_YEREN|P54295    AAAAAAAAAAA::::::::::::::::::::CCC
YENR_YEREN|P54295                                       EEEEEEEEEE   BBB                                     EEEEEEEEEE   BBB


exampleA              <->A    (52,155):38                                      
TC1A_CAEBR               53   KKPLVSLKNRKARVEWAKQHLSWGPREWANHIWSDESKFNMFGTDG   
                              | ||           | |             |     |   |  |    
YENR_YEREN|P54295        39   KTPLhPTiisnypLdWvKkYKKNsyhliDpVIlTakdKvapFawDd   

exampleC             A<->C    (70,75):74    
Uhu                     200   FRFYQDNDQKH   
                                 || |  |    
YENR_YEREN|P54295       159   lgLYQsNsdKn   

53.----------------------------------------------------------------------------------
exampleA    12   0    1029      211-    256 MAOC_FLAPR|P36444    MALATE OXIDOREDUCTA
exampleB    26   0    1222      365-    375 MAOC_FLAPR|P36444    MALATE OXIDOREDUCTA
exampleC    38   0    1187      409-    419 MAOC_FLAPR|P36444    MALATE OXIDOREDUCTA
exampleD    39   0    1229       20-     34 MAOC_FLAPR|P36444    MALATE OXIDOREDUCTA
exampleE    52   0    1074      459-    495 MAOC_FLAPR|P36444    MALATE OXIDOREDUCTA

P<  0.22 for exampleE in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
MAOC_FLAPR|P36444    AAAAAAAAAAAA::::::::::::::::::::::::::::::::::::::::::::::::>
MAOC_FLAPR|P36444                                                                                                    BBB         CCC                                                                                                  BBB         CCC


exampleA              <->A    (52,155):210                                     
HB1                      98   KVPLPSPRHIKARLSLAKTYLNWPVSKWRNILWTDGSKIMLFGGTG   
                              | |       |          |||  |   |  |||  |   |  |   
MAOC_FLAPR|P36444       211   KnPqglyiSlKdKgKvLEilKNWPQkKiqvIVvTDGerIlglGdlG   

exampleE             A<->E    (131,142):202                           
TC1A_CAEBR              237   LEAAWKSIPMTVVQTLLESMPRRCKAVIDAKGYPTKY   
                                 | | |  ||            | |  |          
MAOC_FLAPR|P36444       459   fLDAvKAIkPTVLigssgagqtftKEVveAmssfnek   

54.----------------------------------------------------------------------------------
exampleA    21   0    1017       57-    102 PSRC_WOLSU|P31077    POLYSULFIDE REDUCTA
exampleB    21   0    1227      254-    264 PSRC_WOLSU|P31077    POLYSULFIDE REDUCTA
exampleC    79   0    1083      235-    245 PSRC_WOLSU|P31077    POLYSULFIDE REDUCTA
exampleD    79   0    1144      124-    138 PSRC_WOLSU|P31077    POLYSULFIDE REDUCTA
exampleE    84   0    1042      122-    158 PSRC_WOLSU|P31077    POLYSULFIDE REDUCTA

P<  0.52 for exampleD in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
PSRC_WOLSU|P31077    AAAAAAAAAAAA::::::DDDD
PSRC_WOLSU|P31077                                   EEEEEEEEEE                    CCC  BBB                                 EEEEEEEEEE                    CCC  BBB


exampleA              <->A    (52,155):56                                      
HB1                      98   KVPLPSPRHIKARLSLAKTYLNWPVSKWRNILWTDGSKIMLFGGTG   
                                 |  |  | | | |    |  |   |        |  |  |      
PSRC_WOLSU|P31077        57   agaLIaPLtIGAgLlLLiFdLtrPLhFWkllIFynfSsvMtlGvla   

exampleD             A<->D    (99,104):21       
HB1                     247   WQAPPSHLNPIENLY   
                                 |   | |  |     
PSRC_WOLSU|P31077       124   degPfgfLaPlaNIa   

55.----------------------------------------------------------------------------------
exampleA    87   0    1001      192-    237 RFAB_ECOLI|P27127    LIPOPOLYSACCHARIDE 
exampleB    23   0    1225       41-     51 RFAB_ECOLI|P27127    LIPOPOLYSACCHARIDE 
exampleC    40   0    1187       35-     45 RFAB_ECOLI|P27127    LIPOPOLYSACCHARIDE 
exampleD    51   0    1204      233-    247 RFAB_ECOLI|P27127    LIPOPOLYSACCHARIDE 
exampleE    41   0    1086      334-    369 RFAB_ECOLI|P27127    LIPOPOLYSACCHARIDE 

No P-value computed for single block hits.

exampleB              <->B    (118,225):40  
Uhu                     150   HGGSVMVWACI   
                              |  | |   |    
RFAB_ECOLI|P27127        41   HiqSeMFffCr   

56.----------------------------------------------------------------------------------
exampleA    61   0    1005      273-    318 CP4C_BLADI|P29981    CYTOCHROME P450 4C1
exampleB    51   0    1163       70-     80 CP4C_BLADI|P29981    CYTOCHROME P450 4C1
exampleC    29   0    1223       19-     29 CP4C_BLADI|P29981    CYTOCHROME P450 4C1
exampleD    67   0    1188      127-    141 CP4C_BLADI|P29981    CYTOCHROME P450 4C1
exampleE    61   0    1068      336-    372 CP4C_BLADI|P29981    CYTOCHROME P450 4C1

No P-value computed for single block hits.

exampleC              <->C    (168,276):18  
TC3A_CAEEL              226   FRFQQDNATIH   
                              | | |         
CP4C_BLADI|P29981        19   FlFrQgakraR   

57.----------------------------------------------------------------------------------
exampleA    75   0    1003      149-    194 MAOX_MESCR|P37223    MALATE OXIDOREDUCTA
exampleB    27   0    1222      303-    313 MAOX_MESCR|P37223    MALATE OXIDOREDUCTA
exampleC    76   0    1090      378-    388 MAOX_MESCR|P37223    MALATE OXIDOREDUCTA
exampleD    85   0    1115      171-    185 MAOX_MESCR|P37223    MALATE OXIDOREDUCTA
exampleE    24   0    1105      397-    433 MAOX_MESCR|P37223    MALATE OXIDOREDUCTA

P< 0.098 for exampleB in support of exampleE
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
MAOX_MESCR|P37223    <::::::::::::::::::::::::BBB::::::::::::::::::::::EEEEEEEEEE
MAOX_MESCR|P37223                                                                                                        CCC                                                                                                      CCC


exampleB              <->B    (118,225):302 
TC1A_CAEBR              122   GGGSVMVWGCF   
                              |  ||   |     
MAOX_MESCR|P37223       303   GtASVvlaGlI   

exampleE             B<->E    (100,107):83                            
TC1A_CAEBR              237   LEAAWKSIPMTVVQTLLESMPRRCKAVIDAKGYPTKY   
                              |  |   |  ||            | |  |          
MAOX_MESCR|P37223       397   LiDAvQAIkPTVLigtsgkgkqftKEVveAmaNinak   

58.----------------------------------------------------------------------------------
exampleA    32   0    1013      191-    236 NRAM_INBHK|P16191    NEURAMINIDASE (EC 3
exampleB    75   0    1106      439-    449 NRAM_INBHK|P16191    NEURAMINIDASE (EC 3
exampleC    65   0    1102      379-    389 NRAM_INBHK|P16191    NEURAMINIDASE (EC 3
exampleD    41   0    1221       47-     61 NRAM_INBHK|P16191    NEURAMINIDASE (EC 3
exampleE    67   0    1058      354-    390 NRAM_INBHK|P16191    NEURAMINIDASE (EC 3

P<  0.37 for exampleE in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
NRAM_INBHK|P16191    AAAAAAAAAAAA:::::::::::::::::::::::::::::::EEEEEEEEEE
NRAM_INBHK|P16191                                                                                                        CCC             BBB                                                                                                      CCC             BBB


exampleA              <->A    (52,155):190                                     
Bari-1                  120   KTIEITPTNKTKRLRFALEYVKKPLDFWFNILWTDESAFQYQGSYS   
                                      |          |         ||| | |||    |      
NRAM_INBHK|P16191       191   vgvdgPdsNAliKiKygEAYtDtyhSyaNNILrTqESAcNciGGDc   

exampleE             A<->E    (131,142):117                           
HB1                     283   VQDTWAKIPPKPCXDLVDFMPRGCKAVLANKGYPAKY   
                               |    ||              |        | |      
NRAM_INBHK|P16191       354   hQrMaSKIgrwysRTmsktermGmelyvKydGDPwtd   

59.----------------------------------------------------------------------------------
exampleA    37   0    1012      191-    236 NRAM_INBSI|P16203    NEURAMINIDASE (EC 3
exampleB    77   0    1106      439-    449 NRAM_INBSI|P16203    NEURAMINIDASE (EC 3
exampleC    69   0    1102      379-    389 NRAM_INBSI|P16203    NEURAMINIDASE (EC 3
exampleD    42   0    1221       47-     61 NRAM_INBSI|P16203    NEURAMINIDASE (EC 3
exampleE    71   0    1058      354-    390 NRAM_INBSI|P16203    NEURAMINIDASE (EC 3

P<   0.4 for exampleE in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
NRAM_INBSI|P16203    AAAAAAAAAAAA:::::::::::::::::::::::::::::::EEEEEEEEEE
NRAM_INBSI|P16203                                                                                                        CCC             BBB                                                                                                      CCC             BBB


exampleA              <->A    (52,155):190                                     
Bari-1                  120   KTIEITPTNKTKRLRFALEYVKKPLDFWFNILWTDESAFQYQGSYS   
                                      |          |         ||| | |||    |      
NRAM_INBSI|P16203       191   igvdgPdsNAliKiKygEAYtDtyhSyaNNILrTqESAcNciGGDc   

exampleE             A<->E    (131,142):117                           
HB1                     283   VQDTWAKIPPKPCXDLVDFMPRGCKAVLANKGYPAKY   
                               |    ||              |        | |      
NRAM_INBSI|P16203       354   hQrMaSKIgrwysRTmsktermGmelyvKydGDPwtd   

60.----------------------------------------------------------------------------------
exampleA    27   0    1014      171-    216 HOFB_HAEIN|P44622    PROTEIN TRANSPORT P
exampleB    69   0    1121      268-    278 HOFB_HAEIN|P44622    PROTEIN TRANSPORT P
exampleC    30   0    1220      368-    378 HOFB_HAEIN|P44622    PROTEIN TRANSPORT P
exampleD    77   0    1150      322-    336 HOFB_HAEIN|P44622    PROTEIN TRANSPORT P
exampleE     7   0    1143      276-    312 HOFB_HAEIN|P44622    PROTEIN TRANSPORT P

P<  0.16 for exampleA in support of exampleE
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
HOFB_HAEIN|P44622    <:::::::::::::::::::::AAAAAAAAAAAA::::::::::::::::EEEEEEEEEE
HOFB_HAEIN|P44622                                                                          BBB            DDDD        CCC                                                                        BBB            DDDD        CCC


exampleA              <->A    (52,155):170                                     
TC3A_CAEEL              110   KLRPAPLLSADHKLKRLEFAKNNMGTNWSKVVFSDEKKFNLDGPDG   
                                |    |    ||   |      |    |  |||   | |        
HOFB_HAEIN|P44622       171   anRiISrLkllAKLdisEnRLpqDGRFqFKttFSDildFrLStlpT   

exampleE             A<->E    (131,142):59                            
TC3A_CAEEL              293   ILDAWKSIPDNQLKSLVRSMEDRLIEIIRTQGNPINY   
                                  |   ||          |  |  ||  | ||      
HOFB_HAEIN|P44622       276   tAlqWlntPDKHImTaeDpIEieLdgIIQsQiNPqig   

61.----------------------------------------------------------------------------------
exampleA    30   0    1013       39-     84 TRA0_SHISO|P16944    TRANSPOSASE FOR INS
exampleB    56   0    1143      194-    204 TRA0_SHISO|P16944    TRANSPOSASE FOR INS
exampleC    31   0    1218      148-    158 TRA0_SHISO|P16944    TRANSPOSASE FOR INS
exampleD    55   0    1198       57-     71 TRA0_SHISO|P16944    TRANSPOSASE FOR INS
exampleE    21   0    1108      261-    297 TRA0_SHISO|P16944    TRANSPOSASE FOR INS

P<  0.27 for exampleA in support of exampleE
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
TRA0_SHISO|P16944    AAA:::::::::::::::::::::::::::::::::::::::::::::::EEEEEEEEEE
TRA0_SHISO|P16944                  DDDD                    CCC         BBB                DDDD                    CCC         BBB


exampleA              <->A    (52,155):38                                      
TC3A_CAEEL              110   KLRPAPLLSADHKLKRLEFAKNNMGTNWSKVVFSDEKKFNLDGPDG   
                              |    |     ||   |              |   |  |      |   
TRA0_SHISO|P16944        39   KyPEPPaRktrHKMvkLKpfMDyidmrlAenVWnsEviFaeikamG   

exampleE             A<->E    (131,142):176                           
TC3A_CAEEL              293   ILDAWKSIPDNQLKSLVRSMEDRLIEIIRTQGNPINY   
                              | |        | |            |    |    |   
TRA0_SHISO|P16944       261   IADVaDKreLrQfKetpEqrsRwsrnIcsvtGYrlrY   

62.----------------------------------------------------------------------------------
exampleA    15   0    1029       56-    101 YQHN_BACSU|P54512    HYPOTHETICAL 16.7 K
exampleB    86   0    1049      100-    110 YQHN_BACSU|P54512    HYPOTHETICAL 16.7 K
exampleC    32   0    1218      118-    128 YQHN_BACSU|P54512    HYPOTHETICAL 16.7 K
exampleD    72   0    1175      123-    137 YQHN_BACSU|P54512    HYPOTHETICAL 16.7 K
exampleE    85   0    1039        6-     42 YQHN_BACSU|P54512    HYPOTHETICAL 16.7 K

P<  0.03 for exampleC exampleB in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
YQHN_BACSU|P54512    AAAAAAAAAAAABBB::CCC
YQHN_BACSU|P54512                                    DDDD                                  DDDD


exampleA              <->A    (52,155):55                                      
Bari-1                  120   KTIEITPTNKTKRLRFALEYVKKPLDFWFNILWTDESAFQYQGSYS   
                              |      | | |     | |    ||    |   ||             
YQHN_BACSU|P54512        56   KyRgLvLTSKGKKigkrLvYrHelLDQflrIIgvDEeKIynDVegi   

exampleB             A<->B    (20,24):-2    
HB1                     168   GGPKIMVWACF   
                              |      |      
YQHN_BACSU|P54512       100   GiehhlsWnsI   

exampleC             B<->C    (39,40):7     
TC3A_CAEEL              226   FRFQQDNATIH   
                                |  | |      
YQHN_BACSU|P54512       118   qyFeeDdArKk   

63.----------------------------------------------------------------------------------
exampleA    64   0    1005      711-    756 DPOM_CLAPU|P22373    PROBABLE DNA POLYME
exampleB    36   0    1198      648-    658 DPOM_CLAPU|P22373    PROBABLE DNA POLYME
exampleC    60   0    1123      912-    922 DPOM_CLAPU|P22373    PROBABLE DNA POLYME
exampleD    43   0    1217      333-    347 DPOM_CLAPU|P22373    PROBABLE DNA POLYME
exampleE     5   0    1151      933-    969 DPOM_CLAPU|P22373    PROBABLE DNA POLYME

P<  0.17 for exampleA in support of exampleE
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
DPOM_CLAPU|P22373    AAA:::::::::::::::::::::::::::::::::::::::::::::::EEEEEEEEEE
DPOM_CLAPU|P22373                                                                                                                                                                                                                                                      CCC                                                                                                                                                                                                                                                    CCC


exampleA              <->A    (52,155):710                                     
TC3A_CAEEL              110   KLRPAPLLSADHKLKRLEFAKNNMGTNWSKVVFSDEKKFNLDGPDG   
                              |      |      || |      |  |    || | ||          
DPOM_CLAPU|P22373       711   KikSPdnLylGllpKRtETsLifPGgaWegwyFSeElKFaVahGYe   

exampleE             A<->E    (131,142):176                           
Bari-1                  303   IAEIWSKLTLEFAQTLVRSIPKRLQAVIDAKGGVTKY   
                                    || ||   |    |     |     |   |    
DPOM_CLAPU|P22373       933   hQtEigKLkLEHTiTqgyFIaDktyAIvnTeGeiIKr   

64.----------------------------------------------------------------------------------
exampleA    70   0    1004      153-    198 MAOX_PHAVU|P12628    MALATE OXIDOREDUCTA
exampleB    29   0    1217      307-    317 MAOX_PHAVU|P12628    MALATE OXIDOREDUCTA
exampleC    39   0    1187       82-     92 MAOX_PHAVU|P12628    MALATE OXIDOREDUCTA
exampleD    52   0    1202      175-    189 MAOX_PHAVU|P12628    MALATE OXIDOREDUCTA
exampleE    46   0    1080      401-    437 MAOX_PHAVU|P12628    MALATE OXIDOREDUCTA

P<  0.17 for exampleE in support of exampleB
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
MAOX_PHAVU|P12628    <:::::::::::::::::BBB::::::::::::::::::::::EEEEEEEEEE


exampleB              <->B    (118,225):306 
TC1A_CAEBR              122   GGGSVMVWGCF   
                              |  ||   |     
MAOX_PHAVU|P12628       307   GtASVvlaGlL   

exampleE             B<->E    (100,107):83                            
TC1A_CAEBR              237   LEAAWKSIPMTVVQTLLESMPRRCKAVIDAKGYPTKY   
                              |  | | |  ||            | |             
MAOX_PHAVU|P12628       401   LLEAvKAIkPTVLigssgagktftKEVveTmaslnek   

65.----------------------------------------------------------------------------------
exampleA    89   0    1000      262-    307 NOD1_RHIGA|P50331    NODULATION PROTEIN 
exampleB    58   0    1133      204-    214 NOD1_RHIGA|P50331    NODULATION PROTEIN 
exampleC    83   0    1076      129-    139 NOD1_RHIGA|P50331    NODULATION PROTEIN 
exampleD    44   0    1217       34-     48 NOD1_RHIGA|P50331    NODULATION PROTEIN 
exampleE    65   0    1060       83-    119 NOD1_RHIGA|P50331    NODULATION PROTEIN 

P<  0.11 for exampleE in support of exampleD
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
NOD1_RHIGA|P50331                                  
NOD1_RHIGA|P50331                                                                   CCC                 BBB             AAAAAAAAAAAA                                                                 CCC                 BBB             AAAAAAAAAAAA


exampleD              <->D    (197,305):33      
Uhu                     229   XPAQSPDVNVIXNLW   
                               || |       |     
NOD1_RHIGA|P50331        34   qPAmSaaiarlrNyf   

exampleE             D<->E    (17,23):34                              
TC2A_CAEBR              237   LQDVWQAIPMSVIDTILDSMPRRCQTVIDAKGFPTKY   
                                  |  |     |           | |            
NOD1_RHIGA|P50331        83   sviAWDpIkPaesDrrfRiIlsdfMTlIfmekvikri   

66.----------------------------------------------------------------------------------
exampleA    29   0    1013       39-     84 TRA0_ECOLI|P15025    TRANSPOSASE FOR INS
exampleB    55   0    1143      194-    204 TRA0_ECOLI|P15025    TRANSPOSASE FOR INS
exampleC    57   0    1128      148-    158 TRA0_ECOLI|P15025    TRANSPOSASE FOR INS
exampleD    45   0    1217      361-    375 TRA0_ECOLI|P15025    TRANSPOSASE FOR INS
exampleE    88   0    1027        4-     40 TRA0_ECOLI|P15025    TRANSPOSASE FOR INS

P<  0.23 for exampleC in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
TRA0_ECOLI|P15025    AAAAAAAAAAAA:::::::::::::::::CCC
TRA0_ECOLI|P15025                                                      BBB                                          DDDD                                                    BBB                                          DDDD


exampleA              <->A    (52,155):38                                      
TC3A_CAEEL              110   KLRPAPLLSADHKLKRLEFAKNNMGTNWSKVVFSDEKKFNLDGPDG   
                              |    |     ||   |              |   |  |      |   
TRA0_ECOLI|P15025        39   KyPEPPaRktrHKMvkLKpfMDyidmrlAenVWnsEviFaeikamG   

exampleC             A<->C    (70,75):63    
TC3A_CAEEL              226   FRFQQDNATIH   
                               ||    |      
TRA0_ECOLI|P15025       148   rRFhvfaAPKq   

67.----------------------------------------------------------------------------------
exampleA    84   0    1002      118-    163 Y08F_MYCTU|Q11052    PROBABLE REGULATORY
exampleB    83   0    1062      201-    211 Y08F_MYCTU|Q11052    PROBABLE REGULATORY
exampleC    45   0    1168      318-    328 Y08F_MYCTU|Q11052    PROBABLE REGULATORY
exampleD    46   0    1217      131-    145 Y08F_MYCTU|Q11052    PROBABLE REGULATORY
exampleE    13   0    1122       56-     92 Y08F_MYCTU|Q11052    PROBABLE REGULATORY

No P-value computed for single block hits.

exampleE              <->E    (229,343):55                            
TC1A_CAEEL              237   LENAWKAIPMSVIHKLIDSMPRRCQAVIDANGYATKY   
                                  |   | |     | |            |        
Y08F_MYCTU|Q11052        56   ItAlWeewPPSgARasIhSyvsnLrklLggaGidprv   

68.----------------------------------------------------------------------------------
exampleA    66   0    1005       82-    127 GYRB_ACIS9|Q44276    DNA GYRASE SUBUNIT 
exampleB    34   0    1200       56-     66 GYRB_ACIS9|Q44276    DNA GYRASE SUBUNIT 
exampleC    33   0    1213       67-     77 GYRB_ACIS9|Q44276    DNA GYRASE SUBUNIT 
exampleD    65   0    1190      162-    176 GYRB_ACIS9|Q44276    DNA GYRASE SUBUNIT 
exampleE    29   0    1100      139-    175 GYRB_ACIS9|Q44276    DNA GYRASE SUBUNIT 

P< 0.041 for exampleC exampleB in support of exampleE
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
GYRB_ACIS9|Q44276                 
GYRB_ACIS9|Q44276                                      AAAAAAAAAAAA         DDDD                                    AAAAAAAAAAAA         DDDD


exampleB              <->B    (118,225):55  
Bari-1                  187   GGGTVMFWGCL   
                               | || ||      
GYRB_ACIS9|Q44276        56   sGtTVrFWpse   

exampleC             B<->C    (39,40):0     
Minos                   275   FTFQQDGASSH   
                               || |   |     
GYRB_ACIS9|Q44276        67   WTFsQtifSvd   

exampleE             C<->E    (50,56):61                              
TC1A_CAEEL              237   LENAWKAIPMSVIHKLIDSMPRRCQAVIDANGYATKY   
                              |         |          |  ||     |        
GYRB_ACIS9|Q44276       139   LsElylvegDSaggSakqgrNRkmQAILplKGkilNv   

69.----------------------------------------------------------------------------------
exampleA    51   0    1008       31-     76 PARF_PARTE|P47244    PARAFUSIN | PS00710
exampleB    44   0    1190      387-    397 PARF_PARTE|P47244    PARAFUSIN | PS00710
exampleC    48   0    1161      313-    323 PARF_PARTE|P47244    PARAFUSIN | PS00710
exampleD    48   0    1213      405-    419 PARF_PARTE|P47244    PARAFUSIN | PS00710
exampleE    39   0    1086      342-    378 PARF_PARTE|P47244    PARAFUSIN | PS00710

P< 0.091 for exampleC in support of exampleE
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
PARF_PARTE|P47244    <:::::::::::::::::::::::::::::::::::::::::CCC:::::EEEEEEEEEE
PARF_PARTE|P47244                                                                                                          BBB  DDDD                                                                                                        BBB  DDDD


exampleC              <->C    (168,276):312 
Minos                   275   FTFQQDGASSH   
                              |    ||       
PARF_PARTE|P47244       313   FgaacDGDadR   

exampleE             C<->E    (50,56):18                              
TC3A_CAEEL              293   ILDAWKSIPDNQLKSLVRSMEDRLIEIIRTQGNPINY   
                              |      |  | |    |||            | |     
PARF_PARTE|P47244       342   IAAnanlIfkNgLlgaaRSMPtsgalDkvAakNgIKl   

70.----------------------------------------------------------------------------------
exampleA    74   0    1004        6-     51 RL17_SCHPO|O59794    60S RIBOSOMAL PROTE
exampleB    79   0    1101       76-     86 RL17_SCHPO|O59794    60S RIBOSOMAL PROTE
exampleC    54   0    1137       44-     54 RL17_SCHPO|O59794    60S RIBOSOMAL PROTE
exampleD    49   0    1210      139-    153 RL17_SCHPO|O59794    60S RIBOSOMAL PROTE
exampleE    35   0    1092      103-    139 RL17_SCHPO|O59794    60S RIBOSOMAL PROTE

P<  0.32 for exampleC in support of exampleE
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
RL17_SCHPO|O59794                           
RL17_SCHPO|O59794                         AAAAAAAAAAAA         BBB              DDDD                       AAAAAAAAAAAA         BBB              DDDD


exampleC              <->C    (168,276):43  
TC3A_CAEEL              226   FRFQQDNATIH   
                                   ||   |   
RL17_SCHPO|O59794        44   afiflDNvkeH   

exampleE             C<->E    (50,56):48                              
Bari-1                  303   IAEIWSKLTLEFAQTLVRSIPKRLQAVIDAKGGVTKY   
                               |       |      |   ||       | | || |   
RL17_SCHPO|O59794       103   eAkglDmdkLiikHvqVnaaPKqrrrtyRAhGrVTaY   

71.----------------------------------------------------------------------------------
exampleA    77   0    1003      143-    188 SN2L_CAEEL|P41877    POSSIBLE GLOBAL TRA
exampleB    63   0    1128      412-    422 SN2L_CAEEL|P41877    POSSIBLE GLOBAL TRA
exampleC    52   0    1152      624-    634 SN2L_CAEEL|P41877    POSSIBLE GLOBAL TRA
exampleD    50   0    1208      248-    262 SN2L_CAEEL|P41877    POSSIBLE GLOBAL TRA
exampleE    30   0    1100      907-    943 SN2L_CAEEL|P41877    POSSIBLE GLOBAL TRA

No P-value computed for single block hits.

exampleE              <->E    (229,343):906                           
TC1A_CAEBR              237   LEAAWKSIPMTVVQTLLESMPRRCKAVIDAKGYPTKY   
                              |             ||     |    |   |         
SN2L_CAEEL|P41877       907   LksrtAmelQrrCnTLItlIERemgEVvesKpvivta   

72.----------------------------------------------------------------------------------
exampleA    65   0    1005       82-    127 GYRB_ACIS6|Q44277    DNA GYRASE SUBUNIT 
exampleB    33   0    1200       56-     66 GYRB_ACIS6|Q44277    DNA GYRASE SUBUNIT 
exampleC    87   0    1055       67-     77 GYRB_ACIS6|Q44277    DNA GYRASE SUBUNIT 
exampleD    64   0    1190      162-    176 GYRB_ACIS6|Q44277    DNA GYRASE SUBUNIT 
exampleE    28   0    1100      139-    175 GYRB_ACIS6|Q44277    DNA GYRASE SUBUNIT 

P<  0.11 for exampleB exampleC in support of exampleE
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
GYRB_ACIS6|Q44277                 
GYRB_ACIS6|Q44277                                      AAAAAAAAAAAA         DDDD                                    AAAAAAAAAAAA         DDDD


exampleB              <->B    (118,225):55  
Bari-1                  187   GGGTVMFWGCL   
                               | || ||      
GYRB_ACIS6|Q44277        56   sGtTVrFWpse   

exampleC             B<->C    (39,40):0     
Minos                   275   FTFQQDGASSH   
                               || |   |     
GYRB_ACIS6|Q44277        67   lTFsQtifSvd   

exampleE             C<->E    (50,56):61                              
TC1A_CAEEL              237   LENAWKAIPMSVIHKLIDSMPRRCQAVIDANGYATKY   
                              |         |          |  ||     |        
GYRB_ACIS6|Q44277       139   LsElylvegDSaggSakqgrNRkmQAILplKGkilNv   

73.----------------------------------------------------------------------------------
exampleA    20   0    1018      155-    200 MAOX_POPTR|P34105    MALATE OXIDOREDUCTA
exampleB    46   0    1185       24-     34 MAOX_POPTR|P34105    MALATE OXIDOREDUCTA
exampleC    73   0    1097      485-    495 MAOX_POPTR|P34105    MALATE OXIDOREDUCTA
exampleD    53   0    1200      177-    191 MAOX_POPTR|P34105    MALATE OXIDOREDUCTA
exampleE    34   0    1092      170-    206 MAOX_POPTR|P34105    MALATE OXIDOREDUCTA

No P-value computed for single block hits.

exampleA              <->A    (52,155):154                                     
HB1                      98   KVPLPSPRHIKARLSLAKTYLNWPVSKWRNILWTDGSKIMLFGGTG   
                              | |       |          |||      |  |||  |   |  |   
MAOX_POPTR|P34105       155   KrPqglyiSlKeKgKvLdvlKNWPQksiqvIVvTDGerIlglGdlG   

74.----------------------------------------------------------------------------------
exampleA    28   0    1013      155-    200 MAOX_VITVI|P51615    MALATE OXIDOREDUCTA
exampleB    38   0    1198      309-    319 MAOX_VITVI|P51615    MALATE OXIDOREDUCTA
exampleC    78   0    1083      485-    495 MAOX_VITVI|P51615    MALATE OXIDOREDUCTA
exampleD    78   0    1146      576-    590 MAOX_VITVI|P51615    MALATE OXIDOREDUCTA
exampleE    33   0    1092      403-    439 MAOX_VITVI|P51615    MALATE OXIDOREDUCTA

P<  0.16 for exampleE in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
MAOX_VITVI|P51615    AAAAAAAAAAAA::::::::::::::::::::::::::::::::::::::::::::::::>
MAOX_VITVI|P51615                                                                                     BBB                                            CCC                     DDDD                                                                                   BBB                                            CCC                     DDDD


exampleA              <->A    (52,155):154                                     
HB1                      98   KVPLPSPRHIKARLSLAKTYLNWPVSKWRNILWTDGSKIMLFGGTG   
                                |       |          |||      |  |||  |   |  |   
MAOX_VITVI|P51615       155   rrPqglyiSlKeKgKiLEvlKNWPeRriqvIVvTDGerIlglGdlG   

exampleE             A<->E    (131,142):202                           
TC1A_CAEBR              237   LEAAWKSIPMTVVQTLLESMPRRCKAVIDAKGYPTKY   
                              |  | | |  ||            | || |          
MAOX_VITVI|P51615       403   LLDAvKvIkPTVLigssgvgkaftKEVIeAmascnek   

75.----------------------------------------------------------------------------------
exampleA     5   0    1055      438-    483 OE66_NPVOP|O10305    OCCLUSION-DERIVED V
exampleB    39   0    1198      446-    456 OE66_NPVOP|O10305    OCCLUSION-DERIVED V
exampleC    47   0    1161      173-    183 OE66_NPVOP|O10305    OCCLUSION-DERIVED V
exampleD    54   0    1198      256-    270 OE66_NPVOP|O10305    OCCLUSION-DERIVED V
exampleE    44   0    1085      371-    407 OE66_NPVOP|O10305    OCCLUSION-DERIVED V

No P-value computed for single block hits.

exampleA              <->A    (52,155):437                                     
TC3A_CAEEL              110   KLRPAPLLSADHKLKRLEFAKNNMGTNWSKVVFSDEKKFNLDGPDG   
                              |   |    |   |    ||  |     |   | |   | |    |   
OE66_NPVOP|O10305       438   KTaLAkTRtAGAiLvhARFAemNnLQFkSctLFyDhgmFQLyyniG   

76.----------------------------------------------------------------------------------
exampleA    59   0    1006      810-    855 ITA2_HUMAN|P17301    PLATELET MEMBRANE G
exampleB    40   0    1195      246-    256 ITA2_HUMAN|P17301    PLATELET MEMBRANE G
exampleC    42   0    1178       50-     60 ITA2_HUMAN|P17301    PLATELET MEMBRANE G
exampleD    56   0    1196      163-    177 ITA2_HUMAN|P17301    PLATELET MEMBRANE G
exampleE    38   0    1089      654-    690 ITA2_HUMAN|P17301    PLATELET MEMBRANE G

No P-value computed for single block hits.

exampleE              <->E    (229,343):653                           
TC1A_CAEBR              237   LEAAWKSIPMTVVQTLLESMPRRCKAVIDAKGYPTKY   
                                |   |                 |    ||  |||    
ITA2_HUMAN|P17301       654   dvAIeASfTPEkItlvnknaqiiLKlcfsAKfrPTKq   

77.----------------------------------------------------------------------------------
exampleA    33   0    1012      190-    235 NRAM_INBBE|P27907    NEURAMINIDASE (EC 3
exampleB    64   0    1126       44-     54 NRAM_INBBE|P27907    NEURAMINIDASE (EC 3
exampleC    74   0    1097      378-    388 NRAM_INBBE|P27907    NEURAMINIDASE (EC 3
exampleD    57   0    1196      142-    156 NRAM_INBBE|P27907    NEURAMINIDASE (EC 3
exampleE    66   0    1060      353-    389 NRAM_INBBE|P27907    NEURAMINIDASE (EC 3

P<  0.37 for exampleE in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
NRAM_INBBE|P27907    AAAAAAAAAAAA:::::::::::::::::::::::::::::::EEEEEEEEEE
NRAM_INBBE|P27907                                                                                                        CCC                                                                                                      CCC


exampleA              <->A    (52,155):189                                     
Bari-1                  120   KTIEITPTNKTKRLRFALEYVKKPLDFWFNILWTDESAFQYQGSYS   
                                      |          |         ||| | |||    |      
NRAM_INBBE|P27907       190   igvdgPdsNAliKiKygEAYtDtyhSyaNNILrTqESAcNciGGDc   

exampleE             A<->E    (131,142):117                           
HB1                     283   VQDTWAKIPPKPCXDLVDFMPRGCKAVLANKGYPAKY   
                               |    ||              |        | |      
NRAM_INBBE|P27907       353   hQrMaSKIgrwysRTmsktermGmelyvRydGDPwtd   

78.----------------------------------------------------------------------------------
exampleA    34   0    1012      190-    235 NRAM_INBLN|P16193    NEURAMINIDASE (EC 3
exampleB    65   0    1126       44-     54 NRAM_INBLN|P16193    NEURAMINIDASE (EC 3
exampleC    66   0    1102      378-    388 NRAM_INBLN|P16193    NEURAMINIDASE (EC 3
exampleD    58   0    1196      142-    156 NRAM_INBLN|P16193    NEURAMINIDASE (EC 3
exampleE    68   0    1058      353-    389 NRAM_INBLN|P16193    NEURAMINIDASE (EC 3

P<  0.38 for exampleE in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
NRAM_INBLN|P16193    AAAAAAAAAAAA:::::::::::::::::::::::::::::::EEEEEEEEEE
NRAM_INBLN|P16193                                                                                                        CCC                                                                                                      CCC


exampleA              <->A    (52,155):189                                     
Bari-1                  120   KTIEITPTNKTKRLRFALEYVKKPLDFWFNILWTDESAFQYQGSYS   
                                      |          |         ||| | |||    |      
NRAM_INBLN|P16193       190   igvdgPdsNAliKiKygEAYtDtyhSyaNNILrTqESAcNciGGDc   

exampleE             A<->E    (131,142):117                           
HB1                     283   VQDTWAKIPPKPCXDLVDFMPRGCKAVLANKGYPAKY   
                               |    ||              |        | |      
NRAM_INBLN|P16193       353   hQrMaSKIgrwysRTmsktermGmelyvKydGDPwtd   

79.----------------------------------------------------------------------------------
exampleA    35   0    1012      190-    235 NRAM_INBMF|P16199    NEURAMINIDASE (EC 3
exampleB    66   0    1126       44-     54 NRAM_INBMF|P16199    NEURAMINIDASE (EC 3
exampleC    67   0    1102      378-    388 NRAM_INBMF|P16199    NEURAMINIDASE (EC 3
exampleD    59   0    1196      142-    156 NRAM_INBMF|P16199    NEURAMINIDASE (EC 3
exampleE    69   0    1058      353-    389 NRAM_INBMF|P16199    NEURAMINIDASE (EC 3

P<  0.39 for exampleE in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
NRAM_INBMF|P16199    AAAAAAAAAAAA:::::::::::::::::::::::::::::::EEEEEEEEEE
NRAM_INBMF|P16199                                                                                                        CCC                                                                                                      CCC


exampleA              <->A    (52,155):189                                     
Bari-1                  120   KTIEITPTNKTKRLRFALEYVKKPLDFWFNILWTDESAFQYQGSYS   
                                      |          |         ||| | |||    |      
NRAM_INBMF|P16199       190   igvdgPdsNAliKiKygEAYtDtyhSyaNNILrTqESAcNciGGDc   

exampleE             A<->E    (131,142):117                           
HB1                     283   VQDTWAKIPPKPCXDLVDFMPRGCKAVLANKGYPAKY   
                               |    ||              |        | |      
NRAM_INBMF|P16199       353   hQrMaSKIgrwysRTmsktermGmelyvKydGDPwtd   

80.----------------------------------------------------------------------------------
exampleA    38   0    1012      191-    236 NRAM_INBUS|P16205    NEURAMINIDASE (EC 3
exampleB    71   0    1116       45-     55 NRAM_INBUS|P16205    NEURAMINIDASE (EC 3
exampleC    70   0    1102      379-    389 NRAM_INBUS|P16205    NEURAMINIDASE (EC 3
exampleD    60   0    1196      143-    157 NRAM_INBUS|P16205    NEURAMINIDASE (EC 3
exampleE    72   0    1058      354-    390 NRAM_INBUS|P16205    NEURAMINIDASE (EC 3

P<   0.4 for exampleE in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
NRAM_INBUS|P16205    AAAAAAAAAAAA:::::::::::::::::::::::::::::::EEEEEEEEEE
NRAM_INBUS|P16205                                                                                                        CCC                                                                                                      CCC


exampleA              <->A    (52,155):190                                     
Bari-1                  120   KTIEITPTNKTKRLRFALEYVKKPLDFWFNILWTDESAFQYQGSYS   
                                      |          |         ||| | |||    |      
NRAM_INBUS|P16205       191   igvdgPdsNAliKiKygEAYtDtyhSyaNNILrTqESAcNciGGDc   

exampleE             A<->E    (131,142):117                           
HB1                     283   VQDTWAKIPPKPCXDLVDFMPRGCKAVLANKGYPAKY   
                               |    ||              |        | |      
NRAM_INBUS|P16205       354   hQrMaSKIgrwysRTmsktermGmelyvKydGDPwtd   

81.----------------------------------------------------------------------------------
exampleA    39   0    1012      190-    235 NRAM_INBVI|P16207    NEURAMINIDASE (EC 3
exampleB    67   0    1126       44-     54 NRAM_INBVI|P16207    NEURAMINIDASE (EC 3
exampleC    71   0    1102      378-    388 NRAM_INBVI|P16207    NEURAMINIDASE (EC 3
exampleD    61   0    1196      142-    156 NRAM_INBVI|P16207    NEURAMINIDASE (EC 3
exampleE    73   0    1058      353-    389 NRAM_INBVI|P16207    NEURAMINIDASE (EC 3

P<  0.41 for exampleE in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
NRAM_INBVI|P16207    AAAAAAAAAAAA:::::::::::::::::::::::::::::::EEEEEEEEEE
NRAM_INBVI|P16207                                                                                                        CCC                                                                                                      CCC


exampleA              <->A    (52,155):189                                     
Bari-1                  120   KTIEITPTNKTKRLRFALEYVKKPLDFWFNILWTDESAFQYQGSYS   
                                      |          |         ||| | |||    |      
NRAM_INBVI|P16207       190   igvdgPdsNAliKiKygEAYtDtyhSyaNNILrTqESAcNciGGDc   

exampleE             A<->E    (131,142):117                           
HB1                     283   VQDTWAKIPPKPCXDLVDFMPRGCKAVLANKGYPAKY   
                               |    ||              |        | |      
NRAM_INBVI|P16207       353   hQrMaSKIgrwysRTmsktermGmelyvKydGDPwtd   

82.----------------------------------------------------------------------------------
exampleA    40   0    1012      191-    236 NRAM_INBYB|Q90021    NEURAMINIDASE (EC 3
exampleB    78   0    1106      439-    449 NRAM_INBYB|Q90021    NEURAMINIDASE (EC 3
exampleC    72   0    1102      379-    389 NRAM_INBYB|Q90021    NEURAMINIDASE (EC 3
exampleD    62   0    1196      143-    157 NRAM_INBYB|Q90021    NEURAMINIDASE (EC 3
exampleE    74   0    1058      354-    390 NRAM_INBYB|Q90021    NEURAMINIDASE (EC 3

P<  0.41 for exampleE in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
NRAM_INBYB|Q90021    AAAAAAAAAAAA:::::::::::::::::::::::::::::::EEEEEEEEEE
NRAM_INBYB|Q90021                                                                                                        CCC             BBB                                                                                                      CCC             BBB


exampleA              <->A    (52,155):190                                     
Bari-1                  120   KTIEITPTNKTKRLRFALEYVKKPLDFWFNILWTDESAFQYQGSYS   
                                      |          |         ||| | |||    |      
NRAM_INBYB|Q90021       191   igvdgPdsNAliKiKygEAYtDtyhSyaNNILrTqESAcNciGGDc   

exampleE             A<->E    (131,142):117                           
HB1                     283   VQDTWAKIPPKPCXDLVDFMPRGCKAVLANKGYPAKY   
                               |    ||              |        | |      
NRAM_INBYB|Q90021       354   hQrMaSKIgrwysRTmsktermGmelyvKydGDPwtd   

83.----------------------------------------------------------------------------------
exampleA    73   0    1004      382-    427 NUCL_MOUSE|P09405    NUCLEOLIN (PROTEIN 
exampleB    62   0    1128      649-    659 NUCL_MOUSE|P09405    NUCLEOLIN (PROTEIN 
exampleC    36   0    1190      421-    431 NUCL_MOUSE|P09405    NUCLEOLIN (PROTEIN 
exampleD    73   0    1167      513-    527 NUCL_MOUSE|P09405    NUCLEOLIN (PROTEIN 
exampleE    57   0    1070      150-    186 NUCL_MOUSE|P09405    NUCLEOLIN (PROTEIN 

No P-value computed for single block hits.

exampleC              <->C    (168,276):420 
Minos                   275   FTFQQDGASSH   
                                  ||| |     
NUCL_MOUSE|P09405       421   rlvsQDGkSKg   

84.----------------------------------------------------------------------------------
exampleA    63   0    1005      268-    313 DHA6_YEAST|P54115    ALDEHYDE DEHYDROGEN
exampleB    48   0    1183      185-    195 DHA6_YEAST|P54115    ALDEHYDE DEHYDROGEN
exampleC    37   0    1187       34-     44 DHA6_YEAST|P54115    ALDEHYDE DEHYDROGEN
exampleD    68   0    1185      100-    114 DHA6_YEAST|P54115    ALDEHYDE DEHYDROGEN
exampleE    47   0    1079      380-    416 DHA6_YEAST|P54115    ALDEHYDE DEHYDROGEN

No P-value computed for single block hits.

exampleC              <->C    (168,276):33  
TC3A_CAEEL              226   FRFQQDNATIH   
                              |   ||  |     
DHA6_YEAST|P54115        34   FmkaQDGkTyp   

85.----------------------------------------------------------------------------------
exampleA    49   0    1008      278-    323 CRTI_RHOCA|P17054    PHYTOENE DEHYDROGEN
exampleB    50   0    1168        7-     17 CRTI_RHOCA|P17054    PHYTOENE DEHYDROGEN
exampleC    50   0    1152      104-    114 CRTI_RHOCA|P17054    PHYTOENE DEHYDROGEN
exampleD    75   0    1150      133-    147 CRTI_RHOCA|P17054    PHYTOENE DEHYDROGEN
exampleE    14   0    1118      346-    382 CRTI_RHOCA|P17054    PHYTOENE DEHYDROGEN

No P-value computed for single block hits.

exampleE              <->E    (229,343):345                           
HB1                     283   VQDTWAKIPPKPCXDLVDFMPRGCKAVLANKGYPAKY   
                              |||   |        |    |       | ||    |   
CRTI_RHOCA|P17054       346   VQDIfiKgeLaedmSLyvhrPsvtdptaApKGDdTfY   

86.----------------------------------------------------------------------------------
exampleA    72   0    1004       66-    111 GSHC_SCHMA|Q00277    GLUTATHIONE PEROXID
exampleB    81   0    1086       63-     73 GSHC_SCHMA|Q00277    GLUTATHIONE PEROXID
exampleC    88   0    1050       94-    104 GSHC_SCHMA|Q00277    GLUTATHIONE PEROXID
exampleD    76   0    1150       26-     40 GSHC_SCHMA|Q00277    GLUTATHIONE PEROXID
exampleE    83   0    1043       53-     89 GSHC_SCHMA|Q00277    GLUTATHIONE PEROXID

No P-value computed for single block hits.

exampleA              <->A    (52,155):65                                      
Uhu                      82   KKPFISTKNKGTRMTFAKTHLDKDLEFWNTIIFEDESKFIIFGSDG   
                                        |     |     |         |   ||    |||    
GSHC_SCHMA|Q00277        66   rilafPcnQfGgqepWAEAeiKKfVTEkygVqFdmfSKIkVnGSDa   

87.----------------------------------------------------------------------------------
exampleA     8   0    1033      380-    425 NUCL_HUMAN|P19338    NUCLEOLIN (PROTEIN 
exampleB    61   0    1128      649-    659 NUCL_HUMAN|P19338    NUCLEOLIN (PROTEIN 
exampleC    82   0    1081      686-    696 NUCL_HUMAN|P19338    NUCLEOLIN (PROTEIN 
exampleD    87   0    1098      480-    494 NUCL_HUMAN|P19338    NUCLEOLIN (PROTEIN 
exampleE    63   0    1063       56-     92 NUCL_HUMAN|P19338    NUCLEOLIN (PROTEIN 

P<  0.26 for exampleD in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
NUCL_HUMAN|P19338    AAAAAAAAAAAA::::::::::::::DDDD
NUCL_HUMAN|P19338                                                                                                                                                                                BBB       CCC                                                                                                                                                                              BBB       CCC


exampleA              <->A    (52,155):379                                     
TC2A_CAEBR               53   KKPSISKKNRIARVAWARAHLHWGRQDWANHVFSDESKFNLFGTDG   
                               |   ||| | ||   |        ||    || |     |   ||   
NUCL_HUMAN|P19338       380   pKgkdSKKeRDARtlLAKnlpyKvtQDelKeVFEDaAeIrLvskDG   

exampleD             A<->D    (99,104):54       
HB1                     247   WQAPPSHLNPIENLY   
                              |      |      |   
NUCL_HUMAN|P19338       480   WsgeSktLvlsnlsY   

88.----------------------------------------------------------------------------------
exampleA    41   0    1012      136-    181 YBDM_ECOLI|P77174    HYPOTHETICAL 23.9 K
exampleB    89   0    1000       45-     55 YBDM_ECOLI|P77174    HYPOTHETICAL 23.9 K
exampleC    59   0    1126      185-    195 YBDM_ECOLI|P77174    HYPOTHETICAL 23.9 K
exampleD    86   0    1102       56-     70 YBDM_ECOLI|P77174    HYPOTHETICAL 23.9 K
exampleE    82   0    1044      170-    206 YBDM_ECOLI|P77174    HYPOTHETICAL 23.9 K

No P-value computed for single block hits.

exampleA              <->A    (52,155):135                                     
TC1A_CAEBR               53   KKPLVSLKNRKARVEWAKQHLSWGPREWANHIWSDESKFNMFGTDG   
                                         ||        |   ||     | |       | |    
YBDM_ECOLI|P77174       136   qrIaATiRHnrARgRhqiTAMSeiVRElSqlgWdDnKigkelGmDS   

89.----------------------------------------------------------------------------------
exampleA    58   0    1006       83-    128 YFJJ_ECOLI|P52125    HYPOTHETICAL 24.6 K
exampleB    85   0    1054      196-    206 YFJJ_ECOLI|P52125    HYPOTHETICAL 24.6 K
exampleC    63   0    1111       99-    109 YFJJ_ECOLI|P52125    HYPOTHETICAL 24.6 K
exampleD    82   0    1123      175-    189 YFJJ_ECOLI|P52125    HYPOTHETICAL 24.6 K
exampleE    87   0    1038       42-     78 YFJJ_ECOLI|P52125    HYPOTHETICAL 24.6 K

P<  0.36 for exampleD in support of exampleA
                         |-----   94 residues----|
example              AAAAAAAAAAAA:::::.BBB::::::::::CCC:::::DDDD:::::..EEEEEEEEEE
YFJJ_ECOLI|P52125    AAAAAAAAAAAA::::::::::::DDDD
YFJJ_ECOLI|P52125                             CCC                       BBB                           CCC                       BBB


exampleA              <->A    (52,155):82                                      
Bari-1                  120   KTIEITPTNKTKRLRFALEYVKKPLDFWFNILWTDESAFQYQGSYS   
                                        | |     || |        ||     |    | |    
YFJJ_ECOLI|P52125        83   rKdwPdsRHsTlRyAWvREYtKNrkRhyhlILcfnqdAyyhlGdYd   

exampleD             A<->D    (99,104):46       
TC1A_CAEBR              201   WPSQSPDLNPIEHMW   
                                  |   |    |    
YFJJ_ECOLI|P52125       175   eQtySdlmNrvdyMt   

