#!/bin/sh
#   11/16/94 Changed to search mats.dat instead of blocks.dat   JGH
#   12/19/95 Changed to search blocks.dat with Blocks 9.0

cat > $1.cs << _END_
ERror_level		2			-- only WARNINGs and higher
SQuence			$1.seq			-- the query sequence
DBase			../data-blocks/blocks.dat	-- the BLOCKS database
DBase			../data-prints/prints.noBL	-- PRINTS but not BLOCKS
DBase			../data-pfam/pfam.dat
DBase			../data-prodom/prodom.dat
DBase			../data-domo/domo.dat
OUtput_file		$1.out			-- the output file
STrands_to_search	2			-- if DNA, search both strands
FRequency		./default.amino.frq
REpeats_allowed		yes			-- repeats are allowed
NUmber_to_report	0			-- have blimps judge
COnversion_method	3			-- the conversion method
OP alts: 5.0 default.qij :alts
//
Note: Anything after the second whitespace delimited field in an entry
      is ignored.  Anything after the // is ignored.
Note: The search type is not needed.  A sequence vs a database is a 
      Blocks search.
Note: Only the first two characters are needed for the field key.  The
      case of the characters does not matter.
_END_


