#!/bin/sh

#	Like makecs, but search prints database instead of blocks

cat > $1.cs << _END_
ERror_level		2			-- only WARNINGs and higher
SQuence			$1.seq			-- the query sequence
DBase			../data-prints/prints.dat	-- the BLOCKS database
OUtput_file		$1.out			-- the output file
STrands_to_search	2			-- if DNA, search both strands
REpeats_allowed		yes			-- repeats are allowed
NUmber_to_report	0			-- have blimps judge
COnversion_method	3			-- the conversion method
OP alts: 5.0 default.qij :alts
//

