Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: BBmap
Source: https://sourceforge.net/projects/bbmap/
Files-Excluded: *.class
                *.so
                */*.o
                */*.dylib

Files: *
Copyright: 2008-2015 Brian Bushnell, Jon Rood
           The Regents of the University of California, through Lawrence
           Berkeley National Laboratory (subject to receipt of any required
           approvals from the U.S. Dept. of Energy)
License: BSD-3-clause
Comment: This software was developed under funding from the U.S.
 Department of Energy.  As such, the U.S. Government has been granted for
 itself and others acting on its behalf a paid-up, nonexclusive, irrevoca
 ble, worldwide license in the Software to reproduce, prepare derivative
 works, and perform publicly and display publicly.  Beginning five (5)
 years after the date permission to assert copyright is obtained from the
 U.S. Department of Energy, and subject to any subsequent five (5) year
 renewals, the U.S. Government is granted for itself and others acting on
 its behalf a paid-up, nonexclusive, irrevocable, worldwide li cense in
 the Software to reproduce, prepare derivative works, distribute copies
 to the public, perform publicly and display publicly, and to permit
 others to do so.

Files: resources/truseq.fa.gz
       resources/nextera.fa.gz
Copyright: 2007-2013 Illumina, Inc. All rights reserved
License: BSD-3-clause

Files: debian/*
Copyright: 2016 Andreas Tille <tille@debian.org>
License: BSD-3-clause

License: BSD-3-clause
 Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
 .
  (1) Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
 .
  (2) Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
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  (3) Neither the name of the University of California, Lawrence Berkeley National Laboratory, U.S. Dept. of Energy nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
 .
 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 You are under no obligation whatsoever to provide any bug fixes, patches, or upgrades to the features, functionality or performance of the source code ("Enhancements") to anyone; however, if you choose to make your Enhancements available either publicly, or directly to Lawrence Berkeley National Laboratory, without imposing a separate written license agreement for such Enhancements, then you hereby grant the following license: a  non-exclusive, royalty-free perpetual license to install, use, modify, prepare derivative works, incorporate into other computer software, distribute, and sublicense such enhancements or derivative works thereof, in binary and source code form.
