Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Source: https://github.com/arq5x/bedtools2/archive/v2.25.0.tar.gz
Comment: File barski_binding_site.png is from
  Jothi et al, 2008, doi:10.1093/nar/gkn488, licensed under no-DFSG CC-BY-NC 2.0
Files-Excluded: */barski_binding_site.png
                */g++
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Upstream-Name: bedtools
Upstream-Contact: http://groups.google.com/group/bedtools-discuss

Files: *
Copyright: © 2009,2010,2011 Aaron Quinlan
 © 2010 - Assaf Gordon, CSHL
License: GPL-2

Files: src/utils/htslib/*
Copyright: 2009, 2010, 2012-2015, 2017 Genome Research Ltd.
           2010-2012 Broad Institute.
License: Expat

Files: src/utils/htslib/cram/*
Copyright: 2012-2013 Genome Research Ltd.
                     James Bonfield <jkb@sanger.ac.uk>
License: BSD-3-clause
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions are met:
 .
   1. Redistributions of source code must retain the above copyright notice,
      this list of conditions and the following disclaimer.
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   2. Redistributions in binary form must reproduce the above copyright notice,
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 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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Files: src/utils/htslib/md5.c
Copyright: 2001 Alexander Peslyak, better known as Solar Designer <solar at openwall.com>
License: public_domain
 This software was written by Alexander Peslyak in 2001.  No copyright is
 claimed, and the software is hereby placed in the public domain.
 In case this attempt to disclaim copyright and place the software in the
 public domain is deemed null and void, then the software is
 Copyright (c) 2001 Alexander Peslyak and it is hereby released to the
 general public under the following terms:
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 Redistribution and use in source and binary forms, with or without
 modification, are permitted.
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 There's ABSOLUTELY NO WARRANTY, express or implied.

Files: src/expand/expand.cpp
Copyright: © 2009, 2010, 2011 - Aaron Quinlan
License: under-the-MIT-license
 No further explanation about which MIT license to follow was provided.

Files: src/utils/Fasta/Fasta.cpp
 src/utils/Fasta/Fasta.h
Copyright: © 2010 Erik Garrison <erik.garrison@bc.edu>
License: GPL-2
Source: https://github.com/ekg/fastahack

Files: src/utils/BamTools/*
Copyright: © 2009-2010 Derek Barnett, Erik Garrison, Gabor Marth, Michael Stromberg
License: Expat
Comment: see ‘https://github.com/pezmaster31/bamtools/blob/master/LICENSE’.
Source: https://github.com/pezmaster31/bamtools/wiki

Files: src/utils/gzstream/gzstream.h
Copyright: © 2001  Deepak Bandyopadhyay, Lutz Kettner
License: LGPL-2.1+
 This library is free software; you can redistribute it and/or
 modify it under the terms of the GNU Lesser General Public
 License as published by the Free Software Foundation; either
 version 2.1 of the License, or (at your option) any later version.
 .
 This library is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 Lesser General Public License for more details.
 .
 On Debian systems, you can find a copy of the GNU Lesser General Public License
 version 2.1 in ‘/usr/share/common-licenses/LGPL-2.1’.
Name: gzstream, C++ iostream classes wrapping the zlib compression library.

Files: docs/themes/rtd/static/rtd.css_t
Copyright: © 2007-2010 by the Sphinx team
License: BSD-2-clause
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 modification, are permitted provided that the following conditions are
 met:
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 * Redistributions of source code must retain the above copyright
   notice, this list of conditions and the following disclaimer.
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 * Redistributions in binary form must reproduce the above copyright
   notice, this list of conditions and the following disclaimer in the
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 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
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 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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Homepage: http://sphinx-doc.org
Name: Sphinx

License: GPL-2
 This program is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License version 2 as
 published by the Free Software Foundation.
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 This program is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
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License: Expat
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