<?xml version="1.0"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<parent>
		<artifactId>biojava</artifactId>
		<groupId>org.biojava</groupId>
		<version>3.1.0</version>
	</parent>

	<artifactId>protein-comparison-tool</artifactId>
	<name>protein-comparison-tool</name>
	<url>http://source.rcsb.org</url>
	<properties>	
		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
		<project.build.targetEncoding>UTF-8</project.build.targetEncoding>		
		<maven.build.timestamp.format>yyyyMMdd</maven.build.timestamp.format>    	    	
    	<timestamp>${maven.build.timestamp}</timestamp>		
	</properties>
	
	<dependencies>
		<dependency>
			<groupId>junit</groupId>
			<artifactId>junit</artifactId>

			<scope>test</scope>
		</dependency>
		
		<dependency>
			<groupId>org.biojava</groupId>
			<artifactId>biojava3-alignment</artifactId>
			<version>3.1.0</version>
	
		</dependency>
		<dependency>
			<groupId>org.biojava</groupId>
			<artifactId>biojava3-core</artifactId>
			<version>3.1.0</version>
		</dependency>		
		<dependency>
			<groupId>org.biojava</groupId>
			<artifactId>biojava3-structure</artifactId>
			<version>3.1.0</version>
		</dependency>			
		<dependency>
			<groupId>org.biojava</groupId>
			<artifactId>biojava3-structure-gui</artifactId>
			<version>3.1.0</version>
		</dependency>
		<dependency>
			<groupId>net.sourceforge.jmol</groupId>
			<artifactId>jmol</artifactId>
			<version>13.0.12</version>
		</dependency>		
	</dependencies>

	<build>
		<plugins>
			<plugin>
				<artifactId>maven-assembly-plugin</artifactId>
				<configuration>
					<descriptors>
						<descriptor>src/main/assembly/assembly.xml</descriptor>
					</descriptors>
				</configuration>

				<!-- Attach the creation of the assembly to the package phase. -->
				<executions>
					<execution>
						<id>assemble</id>
						<phase>package</phase>
						<goals>
							<goal>single</goal>
						</goals>
						<configuration>
							<finalName>${project.name}_${timestamp}</finalName>
							<appendAssemblyId>false</appendAssemblyId>
						</configuration>
					</execution>
				</executions>

			</plugin>
	</plugins>
	</build>
</project>
