<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<parent>
		<artifactId>biojava</artifactId>
		<groupId>org.biojava</groupId>
		<version>3.1.0</version>
	</parent>
	<artifactId>biojava3-structure</artifactId>
	<name>biojava3-structure</name>
	<description>The protein structure modules of BioJava.</description>
	
	<repositories>
    	<!--  for vecmath... -->
		<repository>
            <id>geotoolkit</id>
            <name>geotoolkit Repository</name>
            <url>http://maven.geotoolkit.org/</url>
        </repository>
    		
	</repositories>
	
	<dependencies>
		
		<dependency>
			<groupId>org.biojava</groupId>
			<artifactId>biojava3-alignment</artifactId>
			<version>3.1.0</version>
			<scope>compile</scope>
		</dependency>
		<dependency>
			<groupId>org.biojava</groupId>
			<artifactId>biojava3-core</artifactId>
			<version>3.1.0</version>
			<scope>compile</scope>
		</dependency>
	
		<!-- vecmath (coming from geotools) -->
		
		<dependency>
			<groupId>java3d</groupId>
			<artifactId>vecmath</artifactId>
			<version>1.5.2</version>
		</dependency>


		
		<!--  Testing related dependencies -->
		<dependency>
			<groupId>junit</groupId>
			<artifactId>junit</artifactId>
			<scope>test</scope>
			<version>4.11</version>
		</dependency>
		<dependency>
			<groupId>xmlunit</groupId>
			<artifactId>xmlunit</artifactId>
			<version>1.4</version>
			<scope>test</scope>
		</dependency>
	
	</dependencies>
	
	<properties>
		<jdk.version>1.6</jdk.version>
		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
		<project.build.targetEncoding>UTF-8</project.build.targetEncoding>

		<maven.build.timestamp.format>yyyyMMdd-HHmm</maven.build.timestamp.format>
		<timestamp>${maven.build.timestamp}</timestamp>

	</properties>
	<build>
		<plugins>
			<plugin>
				<artifactId>maven-compiler-plugin</artifactId>

				<configuration>
					<source>${jdk.version}</source>
					<target>${jdk.version}</target>
				</configuration>
			</plugin>

			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-resources-plugin</artifactId>
				<version>2.5</version>
			</plugin>

		</plugins>
		<resources>
			<resource>
				<directory>src/main/resources</directory>
				<filtering>true</filtering>
				<includes>
					<include>**/*.properties</include>
				</includes>
			</resource>
			<resource>
				<directory>src/main/resources</directory>
				<filtering>false</filtering>
				<includes>
					<include>**/*.cif.gz</include>
					<include>**/*.pdb</include>
					<include>**/*.mat</include>
				</includes>
			</resource>
		</resources>

	</build>
	
	
</project>

