Program Installation
============================================================================

For code compilation a suitable makefile is provided.

- To create the executable files, type:

make

- To install the man pages (in /usr/share/man/man1/) you should have root permissions and type:

make man

- To install the executable files and perl scripts (default $binDir is ./bin.x86_64), type:

make install

- To delete the excutable files and all the object files from the root and tools directories, type:

make clean

- To delete all installed applications in $binDir, type:

make cleanbin


External packages
============================================================================

For Bowtie or fetchGWI, refer to the following links:

  - bowtie           http://bowtie-bio.sourceforge.net/index.shtml
  - fetchGWI         http://sourceforge.net/projects/tagger/files/fetchGWI-tagger/
