scripts/cif2json: options "--do-not-unprefix-text", "--do-not-unfold-text", "--fix-duplicate-tags-with-same-values", "--fix-duplicate-tags-with-empty-values", "--fix-data-header", "--fix-datablock-names", "--fix-string-quotes", "--fix-missing-closing-double-quote", "--fix-missing-closing-single-quote", "--fix-ctrl-z", "--allow-uqstring-brackets" are not described in help.
scripts/cif_CODify: options "--authors", "-a", "--journal", "-j", "--volume", "-v", "--issue", "-i", "--page", "-p", "--start-page", "--end-page", "-e", "--year", "-y", "--doi", "-D", "--bibliography", "-B", "--bibliography", "--leave-bibliography", "--discard-bibliography", "--leave-title", "--global-priority", "-g", "--no-global-priority", "-g-", "--exclude-publication-details", "--dont-exclude-publication-details", "--no-exclude-publication-details", "--add-cif-header", "-h", "--estimate-spacegroup", "-s", "--estimate-space-group", "--no-estimate-space-group", "-s-", "--dont-estimate-space-group", "--no-estimate-spacegroup", "--dont-estimate-spacegroup", "--keep-unrecognised-spacegroups", "--keep-unrecognised-space-groups", "--no-keep-unrecognised-space-groups", "--dont-keep-unrecognised-space-groups", "--no-keep-unrecognised-spacegroups", "--dont-keep-unrecognised-spacegroups", "--reformat-spacegroup", "--reformat-space-group", "--leave-space-group", "--dont-reformat-space-group", "--leave-spacegroup", "--dont-reformat-spacegroup", "--exclude-empty-tags", "--no-exclude-empty-tags", "--dont-exclude-empty-tags", "--placeholder-tag-list", "--exclude-placeholder-tags", "--no-exclude-placeholder-tags", "--dont-exclude-placeholder-tags", "--exclude-redundant-chemical-names", "--dont-exclude-redundant-chemical-names", "--no-exclude-redundant-chemical-names", "--exclude-empty-non-loop-tags", "--dont-exclude-non-loop-empty-tags", "--no-exclude-non-loop-empty-tags", "--exclude-unknown-tags", "--no-exclude-unknown-tags", "--dont-exclude-unknown-tags", "--exclude-unknown-non-loop-tags", "--dont-exclude-non-loop-unknown-tags", "--no-exclude-non-loop-unknown-tags", "--extra-tag-list", "-x", "--exclude-misspelled-tags", "--dont-exclude-misspelled-tags", "--no-exclude-misspelled-tags", "--parse-formula-sum", "--no-parse-formula-sum", "--dont-parse-formula-sum", "--fix-syntax-errors", "--no-fix-syntax-errors", "--dont-fix-syntax-errors", "--retain-tag-order", "--dont-retain-tag-order", "--preserve-loop-order", "--use-internal-loop-order", "--calculate-cell-volume", "--dont-calculate-cell-volume", "--original-filename", "--clear-original-filename", "--record-original-filename", "--dont-record-original-filename", "--start-data-block-number", "-S", "--datablock-format", "-d", "--renumber-data-blocks", "-R", "--dont-renumber-data-blocks", "-R-", "--original-filename-tag", "--original-data-block-tag", "--database-code-tag", "--update-database-code", "--dont-update-database-code", "--use-datablocks-without-coordinates", "--use-all-datablocks", "--do-not-use-datablocks-without-coordinates", "--dont-use-datablocks-without-coordinates", "--no-use-datablocks-without-coordinates", "--skip-datablocks-without-coordinates", "--use-datablocks-with-structure-factors", "--dont-use-datablocks-with-structure-factors", "--no-use-datablocks-with-structure-factors", "--skip-datablocks-with-structure-factors", "--folding-width", "--fold-title", "--dont-fold-title", "--fold-long-fields", "--dont-fold-long-fields", "--use-perl-parser", "--use-c-parser", "--cif-input", "--json-input", "--cif-output", "--json-output", "--cif", "--json" are described in help, but no longer exist.
scripts/cif_cod_check: options "--check-only-bibliography", "--dont-check-bibliography", "--no-check-bibliography", "--do-not-check-bibliography", "--check-only-authors", "--dont-check-authors", "--no-check-authors", "--do-not-check-authors", "--check-only-chemical-formula-sum", "--dont-check-chemical-formula-sum", "--no-check-chemical-formula-sum", "--do-not-check-chemical-formula-sum", "--check-only-spacegroup-info", "--dont-check-spacegroup-info", "--no-check-spacegroup-info", "--do-not-check-spacegroup-info", "--check-only-symmetry-operators", "--check-only-operators", "--dont-check-symmetry-operators", "--no-check-symmetry-operators", "--do-not-check-symmetry-operators", "--dont-check-operators", "--no-check-operators", "--do-not-check-operators", "--check-constraints-on-unit-cell", "--check-only-constraints-on-unit-cell", "--check-only-unit-cell", "--dont-check-constraints-on-unit-cell", "--do-not-check-constraints-on-unit-cell", "--no-check-constraints-on-unit-cell", "--dont-check-unit-cell", "--do-not-check-unit-cell", "--no-check-unit-cell", "--check-only-symmetry", "--check-only-simultaneous-presence", "--dont-check-simultaneous-presence", "--check-only-limits", "--dont-check-limits", "--no-check-limits", "--do-not-check-limits", "--check-only-adp-presence", "--no-check-adp-presence", "--do-not-check-adp-presence", "--dont-check-adp-presence", "--check-only-temperature-factors", "--dont-check-temperature-factors", "--no-check-temperature-factors", "--do-not-check-temperature-factors", "--dont-check-shelx-checksums", "--do-not-check-shelx-checksums", "--no-check-shelx-checksums", "--check-only-shelx-checksums", "--dont-check-embedded-file-integrity", "--do-not-check-embedded-file-integrity", "--no-check-embedded-file-integrity", "--check-only-embedded-file-integrity", "--check-only-z", "--no-check-z", "--dont-check-z", "--do-not-check-z", "--check-only-disorder", "--no-check-disorder", "--dont-check-disorder", "--do-not-check-disorder", "--check-only-unquoted-strings", "--no-check-unquoted-strings", "--dont-check-unquoted-strings", "--do-not-check-unquoted-strings", "--check-only-pd-block-relations", "--no-check-pd-block-relations", "--dont-check-pd-block-relations", "--do-not-check-pd-block-relations", "--use-precisions", "--dont-use-precisions", "--do-not-use-precisions", "--ignore-precisions", "--use-reporter" are not described in help.
scripts/cif_cod_check: options "--check-only-xyz", "--dont-check-xyz", "--no-check-xyz", "--do-not-check-xyz" are described in help, but no longer exist.
scripts/cif_fix_values: options "--fix-only-misspelled", "--no-fix-misspelled", "--do-not-fix-misspelled", "--dont-fix-misspelled", "--fix-only-temperature", "--no-fix-temperature", "--do-not-fix-temperature", "--dont-fix-temperature", "--fix-only-dois", "--no-fix-dois", "--do-not-fix-dois", "--dont-fix-dois", "--fix-only-enums", "--no-fix-enums", "--do-not-fix-enums", "--dont-fix-enums", "--no-treat-as-set", "--do-not-treat-as-set", "--dont-treat-as-set", "--fix-only-density-meas", "--no-fix-density-meas", "--do-not-fix-density-meas", "--dont-fix-density-meas", "--fix-only-weighting-scheme", "--no-fix-weighting-scheme", "--do-not-fix-weighting-scheme", "--dont-fix-weighting-scheme", "--fix-only-atom-sites-solution", "--no-fix-atom-sites-solution", "--do-not-fix-atom-sites-solution", "--dont-fix-atom-sites-solution" are not described in help.
scripts/cif_molecule: options "--no-P1-expand", "--dont-p1-expand", "--do-not-expand-to-P1", "--do-not-P1-expand", "--do-not-p1-expand", "--do-not-merge-disorder-groups", "--no-merge-disorder-groups", "--do-not-split-disorder-groups", "--no-split-disorder-groups", "--always-continue", "-c-", "--always-die", "--die-on-errors", "--continue-on-warnings", "--die-on-warnings", "--continue-on-notes", "--die-on-notes", "--remove-duplicate-molecules", "--no-remove-duplicate-molecules", "--dont-remove-duplicate-molecules" are not described in help.
scripts/cif_p1: options "--do-not-simplify-formula", "--no-exclude-zero-occupancies", "--dont-exclude-zero-occupancies", "--do-not-merge-disorder-groups", "--no-merge-disorder-groups", "--do-not-split-disorder-groups", "--no-split-disorder-groups" are not described in help.
scripts/cif_parse: options "--do-not-unprefix-text", "--do-not-unfold-text", "--fix-errors", "--fix-duplicate-tags-with-same-values", "--fix-duplicate-tags-with-empty-values", "--fix-data-header", "--fix-datablock-names", "--fix-string-quotes", "--fix-missing-closing-double-quote", "--fix-missing-closing-single-quote", "--fix-ctrl-z", "--allow-uqstring-brackets" are not described in help.
