IGMPlot: src/vmdFileGenerator.cpp File Reference

IGMPlot 3.16 Optimized IGMplot version able to use wfn/wfx/xyz files

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vmdFileGenerator.cpp File Reference

Implementation of methods declared in vmdFileGenerator.h. More...

`#include <vmdFileGenerator.h>`
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## Functions
void | generateVMDAtContribInterFile (const std::string *rep, const bool QMmode)
| Generate the VMD file atContr.
void | generateVMDelfFile (const std::string *rep)
| write the VMD script to display ELF isosurfaces
void | generateVMDigmFile (const std::string *rep)
| Generate the VMD file igm.
void | generateVMDPAULIFile (const std::string *rep)
| write the VMD script to display IGM dg/rho isosurfaces colored with PAULI exchange isosurfaces
void | generateVMDAtomDOIFile (const std::string *rep)
| Generate the VMD file ncc.
void | generateVMDCriticPointsFile (const std::string *rep, std::vector< criticalpoint > cpList)
| Generate the VMD file nci.
void | generateVMDnciFile (const std::string *rep)
| Generate the VMD file nci.
std::string | convertToVMDAtomSelect (std::string str)
| convert a fragment definition in IGMPLOT in an atom selection for vmd session

## Detailed Description

Implementation of methods declared in vmdFileGenerator.h.

## Function Documentation

## ◆ convertToVMDAtomSelect()

std::string convertToVMDAtomSelect | ( | std::string | str | ) |

convert a fragment definition in IGMPLOT in an atom selection for vmd session

Parameters

  str | The string to be converted

Returns
  the converted string

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## ◆ generateVMDAtContribInterFile()

void generateVMDAtContribInterFile | ( | const std::string * | rep,
|  | const bool | QMmode )

Generate the VMD file atContr.

Parameters

  rep | The information for the variable content
  QMmode | True if a wave function is used to derive the electron density, else false for a promolecular calculation

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## ◆ generateVMDAtomDOIFile()

void generateVMDAtomDOIFile | ( | const std::string * | rep | ) |

Generate the VMD file ncc.

- *
  Parameters

    rep | The information for the variable content

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## ◆ generateVMDCriticPointsFile()

void generateVMDCriticPointsFile | ( | const std::string * | rep,
|  | std::vector< criticalpoint > | cpList )

Generate the VMD file nci.

Parameters

  rep | The information for the variable content
  cpList | All the information for each critical point found

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## ◆ generateVMDelfFile()

void generateVMDelfFile | ( | const std::string * | rep | ) |

write the VMD script to display ELF isosurfaces

Parameters

  rep | The information for the variable content

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## ◆ generateVMDigmFile()

void generateVMDigmFile | ( | const std::string * | rep | ) |

Generate the VMD file igm.

Parameters

  rep | The information for the variable content

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## ◆ generateVMDnciFile()

void generateVMDnciFile | ( | const std::string * | rep | ) |

Generate the VMD file nci.

Parameters

  rep | The information for the variable content

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## ◆ generateVMDPAULIFile()

void generateVMDPAULIFile | ( | const std::string * | rep | ) |

write the VMD script to display IGM dg/rho isosurfaces colored with PAULI exchange isosurfaces

Parameters

  rep | The information for the variable content

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