##fileformat=VCFv4.1
##Goby=UNKNOWN
##FieldGroupAssociations=CHROM=genomic-coordinate,CHROM=cross-sample-field,POS=genomic-coordinate,POS=cross-sample-field,ID=external-identifiers,ID=cross-sample-field,REF=cross-sample-field,ALT=cross-sample-field,QUAL=cross-sample-field,FILTER=cross-sample-field,FILTER/STRICT_SOMATIC=cross-sample-field,INFO=cross-sample-field,INFO/BIOMART_COORDS=cross-sample-field,INFO/INDEL=cross-sample-field,INFO/INDEL=indel,INFO/Somatic-P-value(Fisher)[align-specific-sample]=cross-sample-field,INFO/Somatic-P-value(Fisher)[align-specific-sample]=p-value,INFO/Somatic-P-value(Fisher)[align-specific-sample]=statistic,INFO/Somatic-P-value(Fisher)[align-specific-sample]=indexed,INFO/somatic-frequency[align-specific-sample]=cross-sample-field,INFO/somatic-frequency[align-specific-sample]=statistic,INFO/somatic-frequency[align-specific-sample]=indexed,INFO/priority[align-specific-sample]=cross-sample-field,INFO/priority[align-specific-sample]=statistic,INFO/priority[align-specific-sample]=indexed,FORMAT/GT=genotype,FORMAT/BC=base-calls,FORMAT/GB=good-bases,FORMAT/FB=failed-bases,
##FILTER=<ID=STRICT_SOMATIC,Number=1,Type=Flag,Description="Indicates that the site is not a strict somatic candidate. Strict somatic candidates are not detected in the parents and only poorly in the matched germline. False otherwise.">
##INFO=<ID=BIOMART_COORDS,Number=1,Type=String,Description="Coordinates formatted for use with IGV.">
##INFO=<ID=INDEL,Number=1,Type=Flag,Description="Indicates that the variation is an indel.">
##INFO=<ID=Somatic-P-value(Fisher)[align-specific-sample],Number=1,Type=Float,Description="P-value that a variation is somatic in this particular sample, compared to other germline samples (e.g., germline skin, or mother/father).">
##INFO=<ID=somatic-frequency[align-specific-sample],Number=1,Type=Float,Description="Frequency of a somatic variation (%), valid only when the p-value is significant.">
##INFO=<ID=priority[align-specific-sample],Number=1,Type=Float,Description="Somatic priority, larger numbers indicate more support for somatic variation in sample (%)">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=BC,Number=5,Type=String,Description="Base counts in format A=?;T=?;C=?;G=?;N=?.">
##FORMAT=<ID=GB,Number=1,Type=String,Description="Number of bases that pass base filters in this sample, or ignore string.">
##FORMAT=<ID=FB,Number=1,Type=String,Description="Number of bases that failed base filters in this sample, or ignore string.">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	basen0	basen1	basen2	basen3	basen4	basen5	basen6	basen7	basen8	basen9	align-specific-sample
target1	126	.	A	G,C	.	PASS	BIOMART_COORDS=target1:126-126;Somatic-P-value(Fisher)[align-specific-sample]=0.17058871053609448;somatic-frequency[align-specific-sample]=10.0;priority[align-specific-sample]=2.0E7	GT:BC:GB:FB	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/2:A=18,C=2:20:0
target1	127	.	A	G,C	.	PASS	BIOMART_COORDS=target1:127-127;Somatic-P-value(Fisher)[align-specific-sample]=0.5755430245155366;somatic-frequency[align-specific-sample]=10.0;priority[align-specific-sample]=2.0E7	GT:BC:GB:FB	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/2:A=18,C=2:20:0
target1	128	.	A	G,C	.	PASS	BIOMART_COORDS=target1:128-128;Somatic-P-value(Fisher)[align-specific-sample]=0.5755430245155366;somatic-frequency[align-specific-sample]=10.0;priority[align-specific-sample]=2.0E7	GT:BC:GB:FB	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/2:A=18,C=2:20:0
target1	129	.	A	G,C	.	PASS	BIOMART_COORDS=target1:129-129;Somatic-P-value(Fisher)[align-specific-sample]=0.5755430245155366;somatic-frequency[align-specific-sample]=10.0;priority[align-specific-sample]=2.0E7	GT:BC:GB:FB	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/2:A=18,C=2:20:0
target1	130	.	A	G,C	.	PASS	BIOMART_COORDS=target1:130-130;Somatic-P-value(Fisher)[align-specific-sample]=0.5755430245155366;somatic-frequency[align-specific-sample]=10.0;priority[align-specific-sample]=2.0E7	GT:BC:GB:FB	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/2:A=18,C=2:20:0
target1	131	.	A	G,C	.	PASS	BIOMART_COORDS=target1:131-131;Somatic-P-value(Fisher)[align-specific-sample]=0.5755430245155366;somatic-frequency[align-specific-sample]=10.0;priority[align-specific-sample]=2.0E7	GT:BC:GB:FB	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/2:A=18,C=2:20:0
target1	132	.	A	G,C	.	PASS	BIOMART_COORDS=target1:132-132;Somatic-P-value(Fisher)[align-specific-sample]=0.5755430245155366;somatic-frequency[align-specific-sample]=10.0;priority[align-specific-sample]=2.0E7	GT:BC:GB:FB	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/2:A=18,C=2:20:0
target1	133	.	A	G,C	.	PASS	BIOMART_COORDS=target1:133-133;Somatic-P-value(Fisher)[align-specific-sample]=0.5755430245155366;somatic-frequency[align-specific-sample]=10.0;priority[align-specific-sample]=2.0E7	GT:BC:GB:FB	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/2:A=18,C=2:20:0
target1	134	.	A	G,C	.	PASS	BIOMART_COORDS=target1:134-134;Somatic-P-value(Fisher)[align-specific-sample]=0.5755430245155366;somatic-frequency[align-specific-sample]=10.0;priority[align-specific-sample]=2.0E7	GT:BC:GB:FB	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/2:A=18,C=2:20:0
target1	135	.	A	G,C	.	PASS	BIOMART_COORDS=target1:135-135;Somatic-P-value(Fisher)[align-specific-sample]=0.5755430245155366;somatic-frequency[align-specific-sample]=10.0;priority[align-specific-sample]=2.0E7	GT:BC:GB:FB	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/1:A=9,G=1:10:0	0/2:A=18,C=2:20:0
