Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: bio
Source: http://www.bioruby.org/

Files: *
Copyright: 2000-2013 Toshiaki Katayama <k@bioruby.org>
           2002-2013 Naohisa Goto <ng@bioruby.org>
           2000-2008 Mitsuteru C. Nakao <n@bioruby.org>
           2000-2008 Jan Aerts <jan.aerts@bbsrc.ac.uk>
           2000-2006 Yoshinori K. Okuji <okuji@enbug.org>
           2001-2005 Shuichi Kawashima <shuichi@hgc.jp>
           2002 Hiroshi Suga <suga@biophys.kyoto-u.ac.jp>,
           2003 Masumi Itoh <m@bioruby.org>
           2003-2005 Natsuhiro Ichinose <ichinose@genome.ist.i.kyoto-u.ac.jp>
           2004-2006 Alex Gutteridge <alexg@ebi.ac.uk>
           2004-2006 Daniel Amelang <dan@amelang.net>
           2005 Masashi Fujita <fujita@kuicr.kyoto-u.ac.jp>,
           2005-2006 Shuji SHIGENOBU <shige@nibb.ac.jp>
           2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
           2006-2007 Jeffrey Blakeslee and John Conery University of Oregon <jeffb@uoregon.edu>
           2006 Christian M Zmasek <cmzmasek@yahoo.com>
           2006-2008 Ryan Raaum <ryan@raaum.org>
           2007 Center for Biomedical Research Informatics, University of Minnesota
           2008 Raoul Jean Pierre Bonnal
           2008 Adam Kraut <adamnkraut@gmail.com>
           2008 Michael D. Barton <mail@michaelbarton.me.uk>
           2008-2010 Pjotr Prins <pjotr.prins@thebird.nl>
           2009 Diana Jaunzeikare <latvianlinuxgirl@gmail.com>
           2009 Anthony Underwood <anthony.underwood@hpa.org.uk>
           2009-2010 Kozo Nishida <kozo-ni@is.naist.jp>
           2011 Tomoaki NISHIYAMA
License: GPL-2 or Ruby
 BioRuby is copyrighted free software by Toshiaki Katayama <k@bioruby.org>.
 You can redistribute it and/or modify it under either the terms of the GPL
 version 2 (see the file GPL), or the conditions below.

Files: setup.rb
Copyright: 2000-2006 Minero Aoki
License: LGPL-2.1

Files: sample/any2fasta.rb
Copyright: 2006 Pjotr Prins <p@bioruby.org>
License: GPL-2+

Files: sample/biofetch.rb:
Copyright: 2002-2004 KATAYAMA Toshiaki <k@bioruby.org>
License: GPL-2+

Files: sample/enzymes.rb:
Copyright: 2006 Pjotr Prins <p@bioruby.org>
           2006 Trevor Wennblom <trevor@corevx.com>
License: GPL-2+

Files: sample/fasta2tab.rb sample/fsplit.rb sample/gb2tab.rb sample/genes2nuc.rb sample/genes2pep.rb sample/genes2tab.rb sample/genome2tab.rb sample/gt2fasta.rb sample/ssearch2tab.rb sample/tfastx2tab.rb sample/vs-genes.rb
Copyright: 2001 KATAYAMA Toshiaki <k@bioruby.org>
License: GPL-2+

Files: sample/fastagrep.rb sample/fastasort.rb sample/na2aa.rb
Copyright: 2008 KATAYAMA Toshiaki <k@bioruby.org>
           2008 Pjotr Prins <p@bioruby.org>
License: GPL-2+

Files: sample/gb2fasta.rb
Copyright: 2001 KATAYAMA Toshiaki <k@bioruby.org>
           2002 Yoshinori K. Okuji <o@bioruby.org>
License: GPL-2+

Files: sample/gbtab2mysql.rb sample/genome2rb.rb sample/pmfetch.rb sample/pmsearch.rb
Copyright: 2002 KATAYAMA Toshiaki <k@bioruby.org>
License: GPL-2+

Files: sample/tdiary.rb
Copyright: 2003 KATAYAMA Toshiaki <k@bioruby.org>
           2003 Mitsuteru C. Nakao <n@bioruby.org>
           2003 Itoshi NIKAIDO <itoshi@gsc.riken.go.jp>
           2003 Takeya KASUKAWA <kasukawa@gsc.riken.go.jp>
License: GPL-2+

Files: test/data/uniprot/p53_human.uniprot
Copyright: none
 These files are marked to be copyrighted by the UniProt Consortium, but this
 applies to the UniProt database as a whole, not to the individual records.
License: not-the-CC-BY-ND-3.0
 Despite the following statement:
 .
  Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
  Distributed under the Creative Commons Attribution-NoDerivs License
 .
 The above files, as individual records, are not copyrighted.  The statement is
 for the UniProt as a whole.

Files: debian/*
Copyright: Copyright 2011 Lucas Nussbaum <lucas@debian.org>
License: GPL-2 or Ruby

License: GPL-2
 This program is free software; you can redistribute it
 and/or modify it under the terms of the GNU General Public
 License as published by the Free Software Foundation; either
 version 2 of the License, or (at your option) any later
 version.
 .
 This program is distributed in the hope that it will be
 useful, but WITHOUT ANY WARRANTY; without even the implied
 warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
 PURPOSE.  See the GNU General Public License for more
 details.
 .
 You should have received a copy of the GNU General Public
 License along with this package; if not, write to the Free
 Software Foundation, Inc., 51 Franklin St, Fifth Floor,
 Boston, MA  02110-1301 USA
 .
 On Debian systems, the full text of the GNU General Public
 License version 2 can be found in the file
 `/usr/share/common-licenses/GPL-2'.

License: GPL-2+
 This program is free software; you can redistribute it and/or
 modify it under the terms of the GNU General Public License
 as published by the Free Software Foundation; either version 2
 of the License, or (at your option) any later version.
 .
 This program is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 .
 You should have received a copy of the GNU General Public License
 along with this program. If not, see <http://www.gnu.org/licenses/>.
 .
 On Debian systems, the full text of the GNU General Public
 License version 2 can be found in the file
 `/usr/share/common-licenses/GPL-2'.

License: LGPL-2.1
 This library is free software; you can redistribute it and/or
 modify it under the terms of the GNU Lesser General Public
 License as published by the Free Software Foundation; either
 version 2.1 of the License, or (at your option) any later version.
 .
 This library is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 Lesser General Public License for more details.
 .
 You should have received a copy of the GNU Lesser General Public
 License along with this library; if not, write to the Free Software
 Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
 .
 On Debian systems, the full text of the GNU Lesser General Public License
 version 2.1 can be found in the file `/usr/share/common-licenses/LGPL-2.1'.

License: Ruby
 BioRuby is copyrighted free software by Toshiaki Katayama <k@bioruby.org>.
 You can redistribute it and/or modify it under either the terms of the GPL
 version 2 (see the file GPL), or the conditions below:
 .
   1. You may make and give away verbatim copies of the source form of the
      software without restriction, provided that you duplicate all of the
      original copyright notices and associated disclaimers.
 .
   2. You may modify your copy of the software in any way, provided that
      you do at least ONE of the following:
 .
        a) place your modifications in the Public Domain or otherwise
           make them Freely Available, such as by posting said
 	  modifications to Usenet or an equivalent medium, or by allowing
 	  the author to include your modifications in the software.
 .
        b) use the modified software only within your corporation or
           organization.
 .
        c) give non-standard binaries non-standard names, with
           instructions on where to get the original software distribution.
 .
        d) make other distribution arrangements with the author.
 .
   3. You may distribute the software in object code or binary form,
      provided that you do at least ONE of the following:
 .
        a) distribute the binaries and library files of the software,
 	  together with instructions (in the manual page or equivalent)
 	  on where to get the original distribution.
 .
        b) accompany the distribution with the machine-readable source of
 	  the software.
 .
        c) give non-standard binaries non-standard names, with
           instructions on where to get the original software distribution.
 .
        d) make other distribution arrangements with the author.
 .
   4. You may modify and include the part of the software into any other
      software (possibly commercial).  But some files in the distribution
      are not written by the author, so that they are not under these terms.
 .
      For the list of those files and their copying conditions, see the
      file LEGAL.
 .
   5. The scripts and library files supplied as input to or produced as 
      output from the software do not automatically fall under the
      copyright of the software, but belong to whomever generated them, 
      and may be sold commercially, and may be aggregated with this
      software.
 .
   6. THIS SOFTWARE IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR
      IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED
      WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
      PURPOSE.

