seqan (1.4.2+dfsg-2) unstable; urgency=medium

  * Team upload.
  * Declare Conflicts: with libseqan2-dev (API incompatible)
    See https://github.com/seqan/seqan/issues/1820 for upstream discussion.
    Addresses #838340.

 -- Sascha Steinbiss <satta@debian.org>  Fri, 23 Sep 2016 14:20:09 +0000

seqan (1.4.2+dfsg-1) unstable; urgency=medium

  [Andreas Tille] 
  * New upstream version
    Closes: #766741
  * Moved packaging to Git
  * Adapt watch file to fetch only seqan 1.x series
  * Update list of uploaders
  * Add compression option to watch file
  * Remove extras and core/apps from upstream source since these will be taken
    from seqan2 series (when doing so remove other unneeded stuff and binary
    files)
  * Add README.source to explain removals
  * Moved debian/upstream to debian/upstream/metadata
  * Drop documentation since developers should rather use seqan2
    Closes: #816988, #809058
  * Install cmake files
    Closes: #818088
 
  [Gert Wollny]
  * d/rules: Add -DNDEBUG to CXXFLAGS, Closes: #811841 
  * d/rules: enable parallel build

 -- Andreas Tille <tille@debian.org>  Tue, 02 Aug 2016 15:58:06 +0200

seqan (1.4.1+dfsg-2) unstable; urgency=medium

  * Do proper manipulation of build options (thanks for the hint to
    Etienne Millon <me@emillon.org>)
    Closes: #759978, #752558

 -- Andreas Tille <tille@debian.org>  Mon, 01 Sep 2014 22:54:54 +0200

seqan (1.4.1+dfsg-1) unstable; urgency=medium

  * Fix FTBFS on many buildds due to RAM exhaustion (thanks to
    Dejan Latinovic <Dejan.Latinovic@imgtec.com> for the patch)
    Closes: #741288
  * debian/copyright (watch+rules): Remove compressed and unused
    JS files from upstream source

 -- Andreas Tille <tille@debian.org>  Thu, 31 Jul 2014 21:18:43 +0200

seqan (1.4.1-3) unstable; urgency=medium

  * debian/rules:
     - Run test suite only on powerfull architectures (amd64)
       at build time
  * deacticate test for apps splazers which fails since some point
    in time after uploading 1.4.1-2
    Closes: #733250

 -- Andreas Tille <tille@debian.org>  Tue, 28 Jan 2014 09:09:09 +0100

seqan (1.4.1-2) unstable; urgency=low

  * debian/seqan-apps.links: s/mason/seqan_mason
    Closes: #730751

 -- Andreas Tille <tille@debian.org>  Fri, 29 Nov 2013 11:39:01 +0100

seqan (1.4.1-1) unstable; urgency=low

  * New upstream version (patch became unneeded)
    Closes: #720995
  * debian/upstream:
     - Moved DOI+PMID to References
     - Added eprint
  * debian/reference: Deleted in favour of data in debian/upstream
  * debian/watch: adapted to changes at upstream
  * debian/orig-tar.sh: Removed because the removed file is not part
    of the source any more
  * debian/control:
     - debhelper 9
     - remove cdbs from / add python to Build-Depends
     - cme fix dpkg-control
     - canonical Vcs URLs
  * debian/copyright:
     - DEP5
     - Add Upstream-Contact according to latest discussion
     - Update Source to actual download tarball
  * debian/rules:
     - cdbs -> dh
     - Need to rename /usr/bin/join to /usr/bin/seqan-join to avoid
       name clash with coreutils
  * debian/generate_manpages: use help2man to autogenerate manpages
  * debian/README.Debian: Describe what apps go to /usr/bin and why
  * debian/seqan-apps.links: Update apps that should go to /usr/bin
    according to mail from upstream

 -- Andreas Tille <tille@debian.org>  Wed, 27 Nov 2013 10:26:17 +0100

seqan (1.3.1-1) unstable; urgency=low

  * New upstream version
  * debian/watch: Adapt to new way to provide release archives
  * debian/orig-tar.sh:
     - Be less noisy
     - Provide fallback target dir in case .svn/deb-layout doese not
       exist - which is the case at least in my checkout
  * debian/control:
     - Standards-Version: 3.9.3 (no changes needed)
     - distinct short descriptions
  * debian/seqan-dev.doc-base: Provide doc-base control file
  * debian/rules + several debhelper files:
    Rely more on debhelper than manual moving around files to make
    debian/rules better maintaineable
  * debian/rules:
     - Do not specify single target files but rather use find to
       obtain files to move around
     - Save a copy of those files which will be removed by upstream
       clean target otherwise to enable building twice in a row

 -- Andreas Tille <tille@debian.org>  Mon, 23 Apr 2012 13:25:17 +0200

seqan (1.3-1) unstable; urgency=low

  * Team upload.
  * New upstream release (Closes: #640302).

  [ Charles Plessy ]
  * Collected various informations in ‘debian/upstream-metadata.yaml’.
  * Compress the source and binary packages with xz
    (debian/orig-tar.sh, debian/rules).
  * Removed convenience code copy of samtools (debian/orig-tar.sh).
  * Use Debhelper 8 (debian/compat, debian/control).
  * Conforms to Policy 3.9.2 (debian/control, no other changes needed).
  * Built using the cmake class of CDBS (debian/rules).
  * debian/control:
    - Corrected VCS URLs.
    - Build-Depend on libboost-dev as Cmake was looking for it.
    - Build-Depend on zlib1g-dev, as seqan needs to detect zlib to set
      SEQAN_HAS_SAMTOOLS to 1.
    - Changed Priority from extra to optional.
    - Changed seqan-apps Section from libdevel to science.
  * debian/patch/samtools.patch corrects path to SAMtools headers.
  * Machine-readable debian/copyright.

  [ Andreas Tille ]
  * debian/control
    - added myself to uploaders
    - Standards-Version: 3.9.1 (no changes needed)
  * debian/watch: Also catch RC candidates
  * debian/source/format: 3.0 (quilt)

 -- Charles Plessy <plessy@debian.org>  Fri, 16 Sep 2011 12:51:39 +0900

seqan (1.2-1) unstable; urgency=low

  * Initial Release  (Closes: #487361)

 -- Soeren Sonnenburg <sonne@debian.org>  Wed, 30 Sep 2009 20:41:39 +0200
