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@INCOLLECTION{seriation:Garfinkel:1985,
  author = {R. S. Garfinkel},
  title = {Motivation and Modeling},
  year = {1985},
  chapter = {2},
  pages = {17--36},
  crossref = {seriation:Lawler:1985},
  owner = {hahsler},
  timestamp = {2007.03.27}
}

@INCOLLECTION{seriation:Arabie:1996,
  author = {P. Arabie and L. J. Hubert},
  title = {An Overview of Combinatorial Data Analysis},
  booktitle = {Clustering and Classification},
  publisher = {World Scientific},
  year = {1996},
  editor = {P. Arabie and L. J. Hubert and G. De Soete},
  pages = {5--63},
  address = {River Edge, NJ},
  owner = {hahsler},
  timestamp = {2007.07.04}
}

@ARTICLE{seriation:Arabie:1990,
  author = {P. Arabie and L. J. Hubert},
  title = {The Bond Energy Algorithm Revisited},
  journal = {{IEEE} Transactions on Systems, Man, and Cybernetics},
  year = {1990},
  volume = {20},
  pages = {268--74},
  number = {1},
  owner = {hahsler},
  timestamp = {2007.04.10}
}

@ARTICLE{seriation:Bar-Joseph:2001,
  author = {Z. Bar-Joseph and E. D. Demaine and D. K. Gifford and T. Jaakkola},
  title = {Fast Optimal Leaf Ordering for Hierarchical Clustering},
  journal = {Bioinformatics},
  year = {2001},
  volume = {17},
  pages = {22--29},
  number = {1},
  owner = {hahsler},
  timestamp = {2007.03.27}
}

@INPROCEEDINGS{seriation:Bertin:1999,
  author = {J. Bertin},
  title = {Graphics and Graphic Information Processing},
  booktitle = {Readings in Information Visualization},
  year = {1999},
  editor = {S. K. Card and J. D. Mackinlay and B. Shneiderman},
  pages = {62--65},
  address = {San Francisco, CA, USA},
  publisher = {Morgan Kaufmann Publishers Inc.},
  book = {Readings in Information Visualization: Using Vision to Think},
  isbn = {1-55860-533-9}
}

@BOOK{seriation:Bertin:1981,
  title = {Graphics and Graphic Information Processing},
  publisher = {Walter de Gruyter},
  year = {1981},
  author = {Bertin, J},
  address = {Berlin},
  note = {Translated by William J. Berg and Paul Scott},
  owner = {hahsler},
  timestamp = {2007.04.05}
}

@ARTICLE{seriation:Brusco:2007,
  author = {Brusco, M. and K{\"o}hn, H. F. and Stahl, S.},
  title = {Heuristic Implementation of
	Dynamic Programming for Matrix Permutation Problems in Combinatorial
	Data Analysis},
  journal = {Psychometrika},
  year = {2008},
  volume = {73},
  number = {3},
  pages = {503--522},
  owner = {hahsler},
  timestamp = {2007.07.12}
}

@BOOK{seriation:Brusco:2005,
  title = {Branch-and-Bound Applications in Combinatorial Data Analysis},
  publisher = {Springer},
  year = {2005},
  author = {Michael Brusco and Stephanie Stahl},
  owner = {hahsler},
  timestamp = {2007.07.04}
}

@ARTICLE{seriation:Caraux:2005,
  author = {Caraux, G. and Pinloche, S.},
  title = {Permutmatrix: A Graphical Environment to Arrange Gene Expression
	Profiles in Optimal Linear Order},
  journal = {Bioinformatics},
  year = {2005},
  volume = {21},
  pages = {1280--1281},
  number = {7},
  owner = {hahsler},
  timestamp = {2007.03.19}
}

@ARTICLE{seriation:Chen:2002,
  author = {Chun-Houh Chen},
  title = {Generalized Association Plots: Information Visualization via
      Iteratively Generated Correlation Matrices},
  journal = {Statistica Sinica},
  year = {2002},
  volume = {12},
  pages = {7--29},
  number = {1},
  owner = {hahsler},
  timestamp = {2007.03.19}
}

@MANUAL{seriation:Chessel:2007,
  title = {\pkg{ade4}: Analysis of Ecological Data :
      Exploratory and Euclidean methods
	in Multivariate data analysis and graphical display},
  author = {Daniel Chessel and Anne-Beatrice Dufour and Stephane Dray},
  year = {2007},
  note = {R package version 1.4-3},
  url = {http://CRAN.R-project.org/package=ade4},
  owner = {hahsler},
  timestamp = {2007.08.07}
}

@article{seriation:Dray:2007,
    author =  "Stephane  Dray and Anne-Beatrice  Dufour",
    title = "The ade4 Package: Implementing the Duality
        Diagram for Ecologists",
    journal = "Journal of Statistical Software",
    volume =    "22",
    number =  "4",
    day =     "4",
    month = "6",
    year =    "2007",
    URL =     "http://www.jstatsoft.org/v22/i04",
}

@ARTICLE{seriation:Eisen:1998,
  author = {Michael B. Eisen and Paul T. Spellman and Patrick O. Browndagger
	and David Botstein},
  title = {Cluster Analysis and Display of Genome-wide Expression Patterns},
  journal = {Proceedings of the National Academy of Science of the United States},
  year = {1998},
  volume = {95},
  pages = {14863--14868},
  number = {25},
  month = {December},
  owner = {hahsler},
  timestamp = {2007.04.05}
}

@INPROCEEDINGS{seriation:Falguerolles:1997,
  author = {Antoine de Falguerolles and Felix Friedrich and G{\"u}nther Sawitzki},
  title = {A Tribute to {J}. {B}ertin's Graphical Data Analysis},
  booktitle = {SoftStat '97 (Advances in Statistical Software 6)},
  year = {1997},
  editor = {W. Bandilla and F. Faulbaum},
  pages = {11--20},
  publisher = {Lucius \& Lucius},
  owner = {hahsler},
  timestamp = {2007.02.22}
}

@ARTICLE{seriation:Gale:1984,
  author = {N. Gale and W. C. Halperin and C. M. Costanzo},
  title = {Unclassed Matrix Shading and Optimal Ordering in Hierarchical Cluster
	Analysis},
  journal = {Journal of Classification},
  year = {1984},
  volume = {1},
  pages = {75--92},
  owner = {hahsler},
  timestamp = {2007.04.06}
}

@ARTICLE{seriation:Gruvaeus:1972,
  author = {Gruvaeus, G. and Wainer, H.},
  title = {Two Additions to Hierarchical Cluster Analysis},
  journal = {British Journal of Mathematical and Statistical Psychology},
  year = {1972},
  volume = {25},
  pages = {200--206},
  owner = {hahsler},
  timestamp = {2007.03.27}
}

@MANUAL{seriation:Hahsler:2007b,
  title = {\pkg{TSP}: Traveling Salesperson Problem (TSP)},
  author = {Michael Hahsler and Kurt Hornik},
  year = {2007},
  url = {http://CRAN.R-project.org/package=TSP},
  note = {R package version 0.2-2}
}

@ARTICLE{seriation:Hahsler:2007,
    AUTHOR = {Michael Hahsler and Kurt Hornik},
    TITLE = {{TSP} -- {I}nfrastructure for the Traveling Salesperson
        Problem},
    JOURNAL = {Journal of Statistical Software},
    YEAR = {2007},
    VOLUME = {23},
    PAGES = {1-21},
    NUMBER = {2},
    MONTH = {December},
    URL =     "http://www.jstatsoft.org/v23/i02",
}



@BOOK{seriation:Hartigan:1975,
  title = {Clustering Algorithms},
  publisher = {Wiley},
  year = {1975},
  author = {John A. Hartigan},
  owner = {hahsler},
  timestamp = {2007.04.10}
}

@ARTICLE{seriation:Hartigan:1967,
  author = {J. A. Hartigan},
  title = {Representation of Similarity Matrices by Trees},
  journal = {Journal of the American Statistical Association},
  year = {1967},
  volume = {62},
  pages = {1140--1158},
  number = {320},
  owner = {hahsler},
  timestamp = {2007.04.10}
}

@ARTICLE{seriation:Held:1962,
  author = {M. Held and R. M. Karp},
  title = {A Dynamic Programming Approach to Sequencing Problems},
  journal = {Journal of {SIAM}},
  year = {1962},
  volume = {10},
  pages = {196--210},
  owner = {hahsler},
  timestamp = {2007.03.27}
}

@ARTICLE{seriation:Hubert:1974,
  author = {L. J. Hubert},
  title = {Some Applications of Graph Theory and Related Nonmetric Techniques
	to Problems of Approximate Seriation: The Case of Symmetric Proximity
	Measures},
  journal = {British Journal of Mathematical Statistics and Psychology},
  year = {1974},
  volume = {27},
  pages = {133--153},
  owner = {hahsler},
  timestamp = {2007.03.26}
}

@BOOK{seriation:Hubert:2001,
  title = {Combinatorial Data Analysis: Optimization by Dynamic Programming},
  publisher = {Society for Industrial Mathematics},
  year = {2001},
  author = {Lawrence Hubert and Phipps Arabie and Jacqueline Meulman},
  owner = {hahsler},
  timestamp = {2007.07.04}
}

@ARTICLE{seriation:Hubert:1981,
  author = {L. J. Hubert and R. G. Golledge},
  title = {Matrix Reorganization and Dynamic Programming: Applications to Paired
	Comparisons and Unidimensional Seriation},
  journal = {Psychometrika},
  year = {1981},
  volume = {46},
  pages = {429--441},
  number = {4},
  owner = {hahsler},
  timestamp = {2007.03.26}
}

@MANUAL{seriation:Hurley:2007,
  title = {\pkg{gclus}: Clustering Graphics},
  author = {Catherine Hurley},
  year = {2007},
  url = {http://CRAN.R-project.org/package=gclus},
  note = {R package version 1.2}
}

@INPROCEEDINGS{seriation:Ihm:2005,
  author = {Peter Ihm},
  title = {A Contribution to the History of Seriation in Archaeology},
  booktitle = {Classification - the Ubiquitous Challenge, Proceedings of the 28th
	Annual Conference of the Gesellschaft f{\"u}r Klassifikation e.V.,
	University of Dortmund, March 9--11, 2004},
  year = {2005},
  editor = {Weihs, Claus and Gaul, Wolfgang},
  series = {Studies in Classification, Data Analysis, and Knowledge Organization},
  pages = {307--316}
}

@INCOLLECTION{seriation:Kendall:1971,
  author = {Kendall, D. G.},
  title = {Seriation from Abundance Matrices},
  booktitle = {Mathematics in the Archaeological and Historical Sciences},
  year = {1971},
  editor = {F.R. Hodson and D.G. Kendall and P. Tautu},
  pages = {214--252},
  owner = {hahsler},
  timestamp = {2007.03.19}
}

@INCOLLECTION{seriation:Leeuw:2005,
  author = {Jan de Leeuw},
  title = {Unidimensional Scaling},
  booktitle = {Encyclopedia of Statistics in Behavioral Science},
  publisher = {Wiley},
  year = {2005},
  editor = {B.S. Everitt and D.C. Howelll},
  volume = {4},
  owner = {hahsler},
  timestamp = {2007.03.19}
}

@ARTICLE{seriation:Lenstra:1974,
  author = {J. K. Lenstra},
  title = {Clustering a Data Array and the Traveling-Salesman Problem},
  journal = {Operations Research},
  year = {1974},
  volume = {22},
  pages = {413--414},
  number = {2},
  owner = {hahsler},
  timestamp = {2007.04.16}
}

@ARTICLE{seriation:Lin:1973,
  author = {S. Lin and B. W. Kernighan},
  title = {An Effective Heuristic Algorithm for the Traveling-Salesman Problem},
  journal = {Operations Research},
  year = {1973},
  volume = {21},
  pages = {498--516},
  number = {2},
  owner = {hahsler},
  timestamp = {2007.03.27}
}

@ARTICLE{seriation:Ling:1973,
  author = {Robert L. Ling},
  title = {A Computer Generated Aid for Cluster Analysis},
  journal = {Communications of the {ACM}},
  year = {1973},
  volume = {16},
  pages = {355--361},
  number = {6},
  address = {New York, NY, USA},
  publisher = {ACM Press}
}

@ARTICLE{seriation:Marcotorchino:1987,
  author = {F. Marcotorchino},
  title = {Block Seriation Problems: A Unified Approach},
  journal = {Applied Stochastic Models and Data Analysis},
  year = {1987},
  volume = {3},
  pages = {73--91},
  owner = {hahsler},
  timestamp = {2007.04.17}
}

@ARTICLE{seriation:McCormick:1972,
  author = {William T. McCormick and Paul J. Schweitzer and Thomas W. White},
  title = {Problem Decomposition and Data Reorganization by a Clustering Technique},
  journal = {Operations Research},
  year = {1972},
  volume = {20},
  pages = {993--1009},
  number = {5},
  owner = {hahsler},
  timestamp = {2007.04.10}
}

@MANUAL{seriation:Meyer:2007,
  title = {\pkg{proxy}: Distance and Similarity Measures},
  author = {David Meyer and Christian Buchta},
  year = {2007},
  url = "http://CRAN.R-project.org/package=proxy",
  note = {R package version 0.1}
}

@BOOK{seriation:Murtagh:1985,
  title = {Multidimensional Clustering Algorithms},
  publisher = {Physica-Verlag},
  year = {1985},
  author = {Fionn Murtagh},
  volume = {4},
  series = {Compstat Lectures},
  address = {Vienna},
  owner = {hahsler},
  timestamp = {2007.04.10}
}

@ARTICLE{seriation:Niermann:2005,
  author = {Niermann, Stefan},
  title = {Optimizing the Ordering of Tables With Evolutionary Computation},
  journal = {The American Statistician},
  year = {2005},
  volume = {59},
  pages = {41--46},
  number = {1},
  owner = {hahsler},
  timestamp = {2007.03.16}
}

@MANUAL{seriation:Oksanen:2007,
  title = {\pkg{vegan}: Community Ecology Package},
  author = {Jari Oksanen and Roeland Kindt and Pierre Legendre and Bob O'Hara},
  year = {2007},
  note = {R package version 1.8-6},
  owner = {hahsler},
  url = {http://CRAN.R-project.org/package=vegan},
  timestamp = {2007.08.07}
}

@ARTICLE{seriation:Padberg:1990,
  author = {M. Padberg and G. Rinaldi},
  title = {Facet Identification for the Symmetric Traveling Salesman Polytope},
  journal = {Mathematical Programming},
  year = {1990},
  volume = {47},
  pages = {219--257},
  number = {2},
  address = {Secaucus, NJ, USA},
  issn = {0025-5610},
  owner = {hahsler},
  publisher = {Springer-Verlag New York, Inc.},
  timestamp = {2007.03.27}
}

@ARTICLE{seriation:Petrie:1899,
  author = {Petrie, F. W. M.},
  title = {Sequences in Prehistoric Remains},
  journal = {Journal of the Anthropological Institute},
  year = {1899},
  volume = {29},
  pages = {295--301},
  owner = {hahsler},
  timestamp = {2007.03.19}
}

@ARTICLE{seriation:Robinson:1951,
  author = {W. S. Robinson},
  title = {A Method for Chronologically Ordering Archaeological Deposits},
  journal = {American Antiquity},
  year = {1951},
  volume = {16},
  pages = {293--301},
  owner = {hahsler},
  timestamp = {2007.03.19}
}

@ARTICLE{seriation:Rosenkrantz:1977,
  author = {Daniel J. Rosenkrantz and Richard E. Stearns and Philip M. Lewis,
	II},
  title = {An Analysis of Several Heuristics for the Traveling Salesman Problem},
  journal = {{SIAM} Journal on Computing},
  year = {1977},
  volume = {6},
  pages = {563--581},
  number = {3},
  owner = {hahsler},
  timestamp = {2007.03.27}
}

@ARTICLE{seriation:Rousseeuw:1987,
  author = {Rousseeuw, P. J.},
  title = {Silhouettes: A Graphical Aid to the Interpretation and Validation
	of Cluster Analysis},
  journal = {Journal of Computational and Applied Mathematics},
  year = {1987},
  volume = {20},
  pages = {53--65},
  number = {1},
  owner = {hahsler},
  timestamp = {2007.04.10}
}

@BOOK{seriation:Sneath:1973,
  title = {Numerical Taxonomy},
  publisher = {Freeman and Company},
  year = {1973},
  author = {Peter H. A. Sneath and Robert R. Sokal},
  address = {San Francisco},
  owner = {hahsler},
  timestamp = {2007.04.06}
}

@ARTICLE{seriation:Strehl:2003,
  author = {Strehl, A. and Ghosh, J.},
  title = {Relationship-based Clustering and Visualization for High-dimensional
	Data Mining},
  journal = {{INFORMS} Journal on Computing},
  year = {2003},
  volume = {15},
  pages = {208--230},
  number = {2},
  owner = {hahsler},
  timestamp = {2007.04.10}
}

@BOOK{seriation:Gutin:2002,
  title = {The Traveling Salesman Problem and Its Variations},
  publisher = {Kluwer},
  year = {2002},
  editor = {G. Gutin and A. P. Punnen},
  volume = {12},
  series = {Combinatorial Optimization},
  address = {Dordrecht},
  owner = {hahsler},
  timestamp = {2006.11.29}
}

@BOOK{seriation:Lawler:1985,
  title = {The Traveling Salesman Problem},
  publisher = {Wiley},
  year = {1985},
  editor = {Lawler, E. L. and Lenstra, J. K. and Rinnooy Kan, A. H. G. and Shmoys,
	D. B.},
  address = {New York},
  owner = {hahsler},
  timestamp = {2007.03.27}
}

@Book{seriation:Fowler:2004,
    author       = {Martin Fowler},
    title        = {UML Distilled: A Brief Guide to the Standard Object Modeling Language},
    publisher    = {Addison-Wesley Professional},
    edition      = {third},
    year         = 2004,
}
@article{seriation:Jurman:2008,
    author = {Jurman, Giuseppe   and Merler, Stefano   and Barla, Annalisa   and Paoli, Silvano   and Galea, Antonio   and Furlanello, Cesare  },
    journal = {Bioinformatics},
    month = {January},
    number = {2},
    pages = {258--264},
    priority = {3},
    title = {Algebraic Stability Indicators for Ranked Lists in Molecular Profiling},
    volume = {24},
    year = {2008}
}

@Manual{seriation:Hornik+Meyer:2008,
    title = {\pkg{relations}: Data Structures and Algorithms for Relations},
    author = {Kurt Hornik and David Meyer},
    year = {2008},
    url = {http://CRAN.R-project.org/package=relations},
    note = {R package version 0.3-1},
}

@article{seriation:Hahsler+Hornik:2008,
    author = {Michael Hahsler and Kurt Hornik and Christian Buchta},
    title = {Getting Things in Order: An Introduction to the {R}
	Package seriation},
    journal = {Journal of Statistical Software},
    year = {2008},
    volume = {25},
    pages = {1--34},
    number = {3},
    month = {March},
    issn = {1548-7660},
    url = {http://www.jstatsoft.org/v25/i03},
}

@article{seriation:Hahsler+Kornik:2011,
    author = {Michael Hahsler and Kurt Hornik},
    title = {Dissimilarity Plots: {A} Visual Exploration Tool for Partitional Clustering},
    journal = {Journal of Computational and Graphical Statistics},
    year = {2011},
    volume = {10},
    number = {2},
    pages = {335--354},
}

@article{hahsler:Hahsler2016d,
    author = {Michael Hahsler},
    title = {An Experimental Comparison of Seriation Methods For One-Mode 
	Two-Way Data},
    journal = {European Journal of Operational Research},
    year = {2017},
    volume = {257},
    pages = {133--143},
    number = {},
    month = {February},
}

@INPROCEEDINGS{seriation:Ding:2004,
    author = {Chris Ding and Xiaofeng He},
    title = {Linearized cluster assignment via spectral ordering},
    booktitle = {Proceedings of the Twenty-first International Conference on Machine Learning (ICML '04)},
    year = {2004},
    pages = {30},
    publisher = {ACM Press}
}

@INBOOK{seriation:Burkard:1998,
    author = {Rainer E. Burkard and Eranda Cela and Panos M. Pardalos and Leonidas S. Pitsoulis},
    title = {The Quadratic Assignment Problem},
    year = {1998},
    booktitle = {Handbook of Combinatorial Optimization},
    editor = {P. Pardalos and D.-Z. Du},
    publisher = {Springer Verlag}
}


@inproceedings{seriation:Barnard:1993,
    author = {Barnard, S. T. and Pothen, A. and Simon, H. D.},
    title = {A Spectral Algorithm for Envelope Reduction of Sparse Matrices},
    booktitle = {Proceedings of the 1993 ACM/IEEE Conference on Supercomputing},
    series = {Supercomputing '93},
    year = {1993},
    location = {Portland, Oregon, USA},
    pages = {493--502},
    publisher = {ACM},
    address = {New York, NY, USA},
}

@article {seriation:Hubert:1976,
    author = {Hubert, Lawrence and Schultz, James},
    title = {Quadratic Assignment as a General Data Analysis Strategy},
    journal = {British Journal of Mathematical and Statistical Psychology},
    volume = {29},
    number = {2},
    publisher = {Blackwell Publishing Ltd},
    issn = {2044-8317},
    pages = {190--241},
    year = {1976},
}

